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Browsing HMS Scholarly Articles by Harvard-affiliated Author "Dr Marc Vidal"

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Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins

Tonikian, Raffi; Xin, Xiaofeng; Toret, Christopher P.; Gfeller, David; Landgraf, Christiane; Panni, Simona; Paoluzi, Serena et al. (PLoS Biology, 2009) Link to Published Version
Broadening the Horizon – Level 2.5 of the HUPO-PSI Format for Molecular Interactions

Kerrien, Samuel; Orchard, Sandra; Montecchi-Palazzi, Luisa; Aranda, Bruno; Quinn, Antony F; Vinod, Nisha; Bader, Gary D et al. (BMC Biology, 2007) Link to Published Version
Edgetic Perturbation Models of Human Inherited Disorders

Simonis, Nicolas; Li, Qian-Ru; Heuze, Fabien; Klitgord, Niels; Tam, Stanley; Venkatesan, Kavitha; Mou, Danny et al. (Molecular Systems Biology, 2009) Link to Published Version
Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells

Djebali, Sarah; Lagarde, Julien; Kapranov, Philipp; Lacroix, Vincent; Borel, Christelle; Mudge, Jonathan M.; Howald, Cédric et al. (PLoS ONE, 2012) Link to Published Version
A Gene Expression Fingerprint of C. elegans Embryonic Motor Neurons

Fox, Rebecca M; Barlow, Susan J; Shaffer, Christian; Olszewski, Kellen L; Moore, Jason H; Dupuy, Denis; Von Stetina, Stephen et al. (BMC Genomics, 2005) Link to Published Version
A Global Protein–Lipid Interactome Map

Brehme, Marc J; Vidal, Marc (Molecular Systems Biology, 2010) Link to Published Version
Hepatitis C Virus Infection Protein Network

de Chassey, B; Navratil, V; Tafforeau, L; Hiet, M S; Aublin-Gex, A; Agaugué, S; Meiffren, G et al. (Molecular Systems Biology, 2008) Link to Published Version
Host-Pathogen Interactome Mapping for HTLV-1 and -2 Retroviruses

Simonis, Nicolas; Rual, Jean-François; Lemmens, Irma; Boxus, Mathieu; Hirozane-Kishikawa, Tomoko; Gatot, Jean-Stéphane; Dricot, Amélie et al. (Retrovirology, 2012) Link to Published Version
Identification of FAM111A as an SV40 Host Range Restriction and Adenovirus Helper Factor

Fine, Debrah A.; Rozenblatt-Rosen, Orit; Padi, Megha; Korkhin, Anna; James, Robert L.; Adelmant, Guillaume; Yoon, Rosa et al. (PLoS Pathogens, 2012) Link to Published Version
Insight into transcription factor gene duplication from Caenorhabditis elegans Promoterome-driven expression patterns

Reece-Hoyes, John S; Shingles, Jane; Dupuy, Denis; Grove, Christian A; Walhout, Albertha JM; Hope, Ian A; Vidal, Marc (BMC Genomics, 2007) Link to Published Version
InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale

Wang, Haidong; Segal, Eran; Ben-Hur, Asa; Li, Qian-Ru; Koller, Daphne; Vidal, Marc (Genome Biology, 2007) Link to Published Version
Interpreting Cancer Genomes Using Systematic Host Perturbations by Tumour Virus Proteins

Rozenblatt-Rosen, Orit; Deo, Rahul C.; Dricot, Amélie; Askenazi, Manor; Tavares, Maria; Abderazzaq, Fieda; Byrdsong, Danielle et al. (Nature, 2012) Link to Published Version
Intrinsic Disorder Is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes

Haynes, Chad; Oldfield, Christopher J; Ji, Fei; Klitgord, Niels; Radivojac, Predrag; Uversky, Vladimir N; Iakoucheva, Lilia M et al. (PLoS Computational Biology, 2006) Link to Published Version
Large-Scale RNAi Screens Identify Novel Genes that Interact with the C. Elegans Retinoblastoma Pathway as well as Splicing-Related Components with synMuv B Activity

Ceron, Julian; Rual, Jean-François; Chandra, Abha; Dupuy, Denis; van den Heuvel, Sander; Vidal, Marc (BMC Developmental Biology, 2007) Link to Published Version
Protein interactions of the transcription factor Hoxa1

Lambert, Barbara; Vandeputte, Julie; Remacle, Sophie; Bergiers, Isabelle; Simonis, Nicolas; Twizere, Jean-Claude; Vidal, Marc et al. (BMC Developmental Biology, 2012) Link to Published Version
Proto-genes and De Novo Gene Birth

Carvunis, Anne-Ruxandra; Rolland, Thomas; Wapinski, Ilan Neustat; Calderwood, Michael A; Yildirim, Muhammed A.; Simonis, Nicolas; Charloteaux, Benoit et al. (Nature, 2012) Link to Published Version
RNAi Screening Implicates a SKN-1–Dependent Transcriptional Response in Stress Resistance and Longevity Deriving from Translation Inhibition

Robida-Stubbs, Stacey; Tullet, Jennifer M. A.; Rual, Jean-Francois; Vidal, Marc; Blackwell, Thomas Keith; Wang, Jinling (PLoS Genetics, 2010) Link to Published Version
Systems Engineering to Systems Biology

Yıldırım, Muhammed A; Vidal, Marc (Molecular Systems Biology, 2008) Link to Published Version
Viral Perturbations of Host Networks Reflect Disease Etiology

Gulbahce, Natali; Dricot, Amélie; Byrdsong, Danielle; Franchi, Rachel; Lee, Deok-Sun; Rozenblatt-Rosen, Orit; Mar, Jessica C. et al. (PLoS Computational Biology, 2012) Link to Published Version
VirusMINT: A Viral Protein Interaction Database

Chatr-aryamontri, Andrew; Ceol, Arnaud; Peluso, Daniele; Nardozza, Aurelio; Panni, Simona; Sacco, Francesca; Tinti, Michele et al. (Nucleic Acids Research, 2009) Link to Published Version

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