Browsing HMS Scholarly Articles by Harvard-affiliated Author "Dr Martha Leonia Bulyk"

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Browsing HMS Scholarly Articles by Harvard-affiliated Author

Browsing HMS Scholarly Articles by Harvard-affiliated Author "Dr Martha Leonia Bulyk"

Now showing items 1-18 of 18

Bioinformatic and Molecular Investigation of Sirt3 Expression

Swindell, William R; Satterstrom, F. Kyle Kyle; Bulyk, Martha Leonia; Haigis, Marcia C. (BMC Proceedings, 2012) Link to Published Version
Biological Code Breaking in the 21st Century

Bulyk, Martha Leonia; Michelson, Alan M. (Molecular Systems Biology, 2006) Link to Published Version
Computational Prediction of Transcription-Factor Binding Site Locations

Bulyk, Martha Leonia (Genome Biology, 2003) Link to Published Version
An Evolutionarily Conserved Enhancer Regulates Bmp4 Expression in Developing Incisor and Limb Bud

Lachke, Salil A.; O’Connell, Daniel J.; Aboukhalil, Anton; Choe, Sung E.; Turbe-Doan, Annick; Robertson, Erin A.; Amendt, Brad A. et al. (PLoS ONE, 2012) Link to Published Version
Expression-Guided in Silico Evaluation of Candidate Cis Regulatory Codes for Drosophila Muscle Founder Cells

Busser, Brian W; Gisselbrecht, Stephen S; He, Fangxue Sherry; Estrada, Beatriz; Philippakis, Anthony Andrew; Michelson, Alan D; Bulyk, Martha Leonia (PLoS Computational Biology, 2006) Link to Published Version
Genome-Wide Analysis of ETS-Family DNA-Binding In Vitro and In Vivo

Wei, Gong-Hong; Badis, Gwenael; Berger, Michael F; Kivioja, Teemu; Palin, Kimmo; Enge, Martin; Bonke, Martin et al. (The EMBO Journal, 2010) Link to Published Version
Inferring Condition-Specific Transcription Factor Function from DNA Binding and Gene Expression Data

McCord, Rachel Patton; Berger, Michael F; Philippakis, Anthony Andrew; Bulyk, Martha Leonia (Molecular Systems Biology, 2007) Link to Published Version
Integrative Functional Genomics

Bulyk, Martha Leonia (Genome Biology, 2004) Link to Published Version
Meta-Analysis Discovery of Tissue-Specific DNA Sequence Motifs from Mammalian Gene Expression Data

Huber, Bertrand R; Bulyk, Martha Leonia (BMC Bioinformatics, 2006) Link to Published Version
Meta-Profiles of Gene Expression during Aging: Limited Similarities between Mouse and Human and an Unexpectedly Decreased Inflammatory Signature

Sun, Liou; Xing, Xianying; Fisher, Gary J.; Elder, James T.; Gudjonsson, Johann E.; Bulyk, Martha Leonia; Johnston, Andrew et al. (PLoS ONE, 2012) Link to Published Version
Objective Sequence-Based Subfamily Classifications of Mouse Homeodomains Reflect Their In Vitro DNA-Binding Preferences

Santos, Miguel A.; Turinsky, Andrei L.; Ong, Serene; Tsai, Jennifer; Berger, Michael F.; Badis, Gwenael; Talukder, Shaheynoor et al. (Nucleic Acids Research, 2010) Link to Published Version
Predicting the Binding Preference of Transcription Factors to Individual DNA \(\kappa\)-mers

Alleyne, Trevis M.; Peña-Castillo, Lourdes; Badis, Gwenael; Talukder, Shaheynoor; Berger, Michael F.; Gehrke, Andrew R.; Morris, Quaid D. et al. (Bioinformatics, 2008) Link to Published Version
Short-Term Calorie Restriction in Male Mice Feminizes Gene Expression and Alters Key Regulators of Conserved Aging Regulatory Pathways

Estep, Preston Wayne; Warner, Jason B.; Bulyk, Martha Leonia (PLoS ONE, 2009) Link to Published Version
UniPROBE, Update 2011: Expanded Content and Search Tools in the Online Database of Protein-Binding Microarray Data on Protein–DNA Interactions

Robasky, Kimberly; Bulyk, Martha Leonia (Nucleic Acids Research, 2010) Link to Published Version
UniPROBE: An Online Database of Protein Binding Microarray Data on Protein–DNA Interactions

Newburger, Daniel E.; Bulyk, Martha Leonia (Nucleic Acids Research, 2009) Link to Published Version
Using a Structural and Logics Systems Approach to Infer bHLH-DNA Binding Specificity Determinants

De Masi, Federico; Grove, Christian A.; Vedenko, Anastasia; Gisselbrecht, Stephen S.; Serrano, Luis; Walhout, Albertha J. M.; Alibés, Andreu et al. (Nucleic Acids Research, 2011) Link to Published Version
Using Protein Design Algorithms to Understand the Molecular Basis of Disease Caused by Protein–DNA Interactions: The Pax6 Example

Alibés, Andreu; Nadra, Alejandro D.; De Masi, Federico; Serrano, Luis; Stricher, François; Bulyk, Martha Leonia (Nucleic Acids Research, 2010) Link to Published Version
The Vibrio harveyi Master Quorum-sensing Regulator, LuxR, a TetR-type Protein is Both an Activator and a Repressor: DNA Recognition and Binding Specificity at Target Promoters

Pompeani, Audra J; Irgon, Joseph J; Berger, Michael F; Wingreen, Ned S; Bassler, Bonnie L; Bulyk, Martha Leonia (Molecular Microbiology, 2008) Link to Published Version

Now showing items 1-18 of 18

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