dc.contributor.author | Robasky, Kimberly | |
dc.contributor.author | Bulyk, Martha Leonia | |
dc.date.accessioned | 2011-03-19T08:49:13Z | |
dc.date.issued | 2010 | |
dc.identifier.citation | Robasky, Kimberly, and Martha L. Bulyk. 2011. UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on proteinâ DNA interactions. Nucleic Acids Research 39(Database issue): D124-D128. | en_US |
dc.identifier.issn | 0305-1048 | en_US |
dc.identifier.uri | http://nrs.harvard.edu/urn-3:HUL.InstRepos:4745741 | |
dc.description.abstract | The Universal PBM Resource for Oligonucleotide-Binding Evaluation (UniPROBE) database is a centralized repository of information on the DNA-binding preferences of proteins as determined by universal protein-binding microarray (PBM) technology. Each entry for a protein (or protein complex) in UniPROBE provides the quantitative preferences for all possible nucleotide sequence variants (‘words’) of length k (‘k-mers’), as well as position weight matrix (PWM) and graphical sequence logo representations of the k-mer data. In this update, we describe >130% expansion of the database content, incorporation of a protein BLAST (blastp) tool for finding protein sequence matches in UniPROBE, the introduction of UniPROBE accession numbers and additional database enhancements. The UniPROBE database is available at http://uniprobe.org. | en_US |
dc.language.iso | en_US | en_US |
dc.publisher | Oxford University Press | en_US |
dc.relation.isversionof | doi://10.1093/nar/gkq992 | en_US |
dc.relation.hasversion | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013812/pdf/ | en_US |
dash.license | LAA | |
dc.title | UniPROBE, Update 2011: Expanded Content and Search Tools in the Online Database of Protein-Binding Microarray Data on Protein–DNA Interactions | en_US |
dc.type | Journal Article | en_US |
dc.description.version | Version of Record | en_US |
dc.relation.journal | Nucleic Acids Research | en_US |
dash.depositing.author | Bulyk, Martha Leonia | |
dc.date.available | 2011-03-19T08:49:13Z | |
dash.affiliation.other | HMS^Pathology | en_US |
dash.affiliation.other | HMS^Medicine-Brigham and Women's Hospital | en_US |
dc.identifier.doi | 10.1093/nar/gkq992 | * |
dash.contributor.affiliated | Bulyk, Martha | |