rtracklayer: an R package for interfacing with genome browsers
| Title: | rtracklayer: an R package for interfacing with genome browsers |
| Author: |
Gentleman, Robert; Lawrence, Michael; Carey, Vincent James
Note: Order does not necessarily reflect citation order of authors. |
| Citation: | Lawrence, Michael, Robert Gentleman, and Vincent Carey. 2009. rtracklayer: an R package for interfacing with genome browsers. Bioinformatics 25(14): 1841-1842. |
| Full Text & Related Files: |
2705236.pdf (100.5Kb; PDF) 
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| Abstract: | Summary: The rtracklayer package supports the integration of existing genome browsers with experimental data analyses performed in R. The user may (i) transfer annotation tracks to and from a genome browser and (ii) create and manipulate browser views to focus on a particular set of annotations in a specific genomic region. Currently, the UCSC genome browser is supported. Availability: The package is freely available from http://www.bioconductor.org/. A quick-start vignette is included with the package. Contact: mflawren@fhcrc.org |
| Published Version: | doi:10.1093/bioinformatics/btp328 |
| Other Sources: | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2705236/pdf/ |
| Terms of Use: | This article is made available under the terms and conditions applicable to Other Posted Material, as set forth at http://nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of-use#LAA |
| Citable link to this page: | http://nrs.harvard.edu/urn-3:HUL.InstRepos:4885950 |
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