Browsing by Author "Ciccarese, Paolo Nunzio"

Now showing items 1-8 of 8

    • BioC: a minimalist approach to interoperability for biomedical text processing 

      Comeau, Donald C.; Islamaj Doğan, Rezarta; Ciccarese, Paolo; Cohen, Kevin Bretonnel; Krallinger, Martin; Leitner, Florian; Lu, Zhiyong; Peng, Yifan; Rinaldi, Fabio; Torii, Manabu; Valencia, Alfonso; Verspoor, Karin; Wiegers, Thomas C.; Wu, Cathy H.; Wilbur, W. John (Oxford University Press, 2013)
      A vast amount of scientific information is encoded in natural language text, and the quantity of such text has become so great that it is no longer economically feasible to have a human as the first step in the search ...

    • A Hybrid Human and Machine Resource Curation Pipeline for the Neuroscience Information Framework 

      Bandrowski, A. E.; Cachat, J.; Müller, H. M.; Sternberg, P. W.; Marenco, L.; Astakhov, V.; Grethe, J. S.; Martone, M. E.; Li, Y.; Ciccarese, Paolo Nunzio; Clark, Timothy William; Wang, R. (Oxford University Press, 2012)
      The breadth of information resources available to researchers on the Internet continues to expand, particularly in light of recently implemented data-sharing policies required by funding agencies. However, the nature of ...

    • Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications 

      Clark, Tim; Ciccarese, Paolo N; Goble, Carole A (BioMed Central, 2014)
      Background: Scientific publications are documentary representations of defeasible arguments, supported by data and repeatable methods. They are the essential mediating artifacts in the ecosystem of scientific communications. ...

    • An Open Annotation Ontology for Science on Web 3.0 

      Ciccarese, Paolo Nunzio; Ocana, Marco; Garcia Castro, Leyla Jael; Das, Sudeshna; Clark, Timothy William (BioMed Central, 2011)
      Background: There is currently a gap between the rich and expressive collection of published biomedical ontologies, and the natural language expression of biomedical papers consumed on a daily basis by scientific researchers. ...

    • Open Semantic Annotation Of Scientific Publications Using DOMEO 

      Ciccarese, Paolo Nunzio; Ocana, Marco; Clark, Timothy William (BioMed Central, 2012)
      Background: Our group has developed a useful shared software framework for performing, versioning, sharing and viewing Web annotations of a number of kinds, using an open representation model. Methods: The Domeo Annotation ...

    • PAV ontology: provenance, authoring and versioning 

      Ciccarese, Paolo; Soiland-Reyes, Stian; Belhajjame, Khalid; Gray, Alasdair JG; Goble, Carole; Clark, Tim (BioMed Central, 2013)
      Background: Provenance is a critical ingredient for establishing trust of published scientific content. This is true whether we are considering a data set, a computational workflow, a peer-reviewed publication or a simple ...

    • Semantic Web repositories for genomics data using the eXframe platform 

      Merrill, Emily; Corlosquet, Stéphane; Ciccarese, Paolo; Clark, Tim; Das, Sudeshna (BioMed Central, 2014)
      Background: With the advent of inexpensive assay technologies, there has been an unprecedented growth in genomics data as well as the number of databases in which it is stored. In these databases, sample annotation using ...

    • The SWAN biomedical discourse ontology 

      Ciccarese, Paolo Nunzio; Wu, Elizabeth; Wong, Gwen; Ocana, Marco; Kinoshita, June; Ruttenberg, Alan; Clark, Timothy William (Elsevier BV, 2008)
      SWAN (Semantic Web Application in Neuromedicine) is a project to construct a semantically-organized, community-curated, distributed knowledge base of Theory, Evidence, and Discussion in biomedicine. Unlike Wikipedia and ...