Browsing by Author "Mallick, Swapan"

Now showing items 1-19 of 19

    • Analysis of Chimpanzee History Based on Genome Sequence Alignments 

      Caswell, Jennifer L.; Mallick, Swapan; Richter, Daniel J.; Neubauer, Julie; Schirmer, Christine; Gnerre, Sante; Reich, David Emil (Public Library of Science, 2008)
      Population geneticists often study small numbers of carefully chosen loci, but it has become possible to obtain orders of magnitude for more data from overlaps of genome sequences. Here, we generate tens of millions of ...

    • Ancient human genomes suggest three ancestral populations for present-day Europeans 

      Lazaridis, Iosif; Patterson, Nick; Mittnik, Alissa; Renaud, Gabriel; Mallick, Swapan; Kirsanow, Karola; Sudmant, Peter H.; Schraiber, Joshua G.; Castellano, Sergi; Lipson, Mark; Berger, Bonnie; Economou, Christos; Bollongino, Ruth; Fu, Qiaomei; Bos, Kirsten I.; Nordenfelt, Susanne; Li, Heng; de Filippo, Cesare; Prüfer, Kay; Sawyer, Susanna; Posth, Cosimo; Haak, Wolfgang; Hallgren, Fredrik; Fornander, Elin; Rohland, Nadin; Delsate, Dominique; Francken, Michael; Guinet, Jean-Michel; Wahl, Joachim; Ayodo, George; Babiker, Hamza A.; Bailliet, Graciela; Balanovska, Elena; Balanovsky, Oleg; Barrantes, Ramiro; Bedoya, Gabriel; Ben-Ami, Haim; Bene, Judit; Berrada, Fouad; Bravi, Claudio M.; Brisighelli, Francesca; Busby, George B. J.; Cali, Francesco; Churnosov, Mikhail; Cole, David E. C.; Corach, Daniel; Damba, Larissa; van Driem, George; Dryomov, Stanislav; Dugoujon, Jean-Michel; Fedorova, Sardana A.; Romero, Irene Gallego; Gubina, Marina; Hammer, Michael; Henn, Brenna M.; Hervig, Tor; Hodoglugil, Ugur; Jha, Aashish R.; Karachanak-Yankova, Sena; Khusainova, Rita; Khusnutdinova, Elza; Kittles, Rick; Kivisild, Toomas; Klitz, William; Kučinskas, Vaidutis; Kushniarevich, Alena; Laredj, Leila; Litvinov, Sergey; Loukidis, Theologos; Mahley, Robert W.; Melegh, Béla; Metspalu, Ene; Molina, Julio; Mountain, Joanna; Näkkäläjärvi, Klemetti; Nesheva, Desislava; Nyambo, Thomas; Osipova, Ludmila; Parik, Jüri; Platonov, Fedor; Posukh, Olga; Romano, Valentino; Rothhammer, Francisco; Rudan, Igor; Ruizbakiev, Ruslan; Sahakyan, Hovhannes; Sajantila, Antti; Salas, Antonio; Starikovskaya, Elena B.; Tarekegn, Ayele; Toncheva, Draga; Turdikulova, Shahlo; Uktveryte, Ingrida; Utevska, Olga; Vasquez, René; Villena, Mercedes; Voevoda, Mikhail; Winkler, Cheryl; Yepiskoposyan, Levon; Zalloua, Pierre; Zemunik, Tatijana; Cooper, Alan; Capelli, Cristian; Thomas, Mark G.; Ruiz-Linares, Andres; Tishkoff, Sarah A.; Singh, Lalji; Thangaraj, Kumarasamy; Villems, Richard; Comas, David; Sukernik, Rem; Metspalu, Mait; Meyer, Matthias; Eichler, Evan E.; Burger, Joachim; Slatkin, Montgomery; Pääbo, Svante; Kelso, Janet; Reich, David; Krause, Johannes (2014)
      We sequenced the genomes of a ~7,000 year old farmer from Germany and eight ~8,000 year old hunter-gatherers from Luxembourg and Sweden. We analyzed these and other ancient genomes1–4 with 2,345 contemporary humans to show ...

    • Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas 

      Llamas, Bastien; Fehren-Schmitz, Lars; Valverde, Guido; Soubrier, Julien; Mallick, Swapan; Rohland, Nadin; Nordenfelt, Susanne; Valdiosera, Cristina; Richards, Stephen M.; Rohrlach, Adam; Romero, Maria Inés Barreto; Espinoza, Isabel Flores; Cagigao, Elsa Tomasto; Jiménez, Lucía Watson; Makowski, Krzysztof; Reyna, Ilán Santiago Leboreiro; Lory, Josefina Mansilla; Torrez, Julio Alejandro Ballivián; Rivera, Mario A.; Burger, Richard L.; Ceruti, Maria Constanza; Reinhard, Johan; Wells, R. Spencer; Politis, Gustavo; Santoro, Calogero M.; Standen, Vivien G.; Smith, Colin; Reich, David; Ho, Simon Y. W.; Cooper, Alan; Haak, Wolfgang (American Association for the Advancement of Science, 2016)
      The exact timing, route, and process of the initial peopling of the Americas remains uncertain despite much research. Archaeological evidence indicates the presence of humans as far as southern Chile by 14.6 thousand years ...

    • Ancient West African Foragers in the Context of African Population History 

      Lipson, Mark; Rohland-Pinello, Nadin; Lawson, Ann; Lavachery, Philippe; Mindzie, Christophe Mbida; Orban, Rosine; Semal, Patrick; Van Neer, Wim; Veeramah, Krishna R.; Kennett, Douglas J.; Patterson, Nick; Hellenthal, Garrett; Lalueza-Fox, Carles; MacEachern, Scott; Prendergast, Mary E.; Reich, David; Ribot, Isabelle; Mallick, Swapan; Olalde, Inigo; Adamski, Nicole; Broomandkhoshbacht, Nadin; López, Saloa; Oppenheimer, Jonas; Stewardson, Kristin; Asombang, Raymond; Bocherens, Herve; Bradman, Neil; Culleton, Brendan; Cornelissen, Els; Crevecoeur, Isabelle; de Maret, Pierre; Fomine, Forka Leypey Mathew; Sawchuk, Elizabeth; Thomas, Mark (Springer Science and Business Media LLC, 2020-01)
      We generated genome-wide DNA data from four children buried roughly 8000 and 3000 years ago at Shum Laka (Cameroon), one of the earliest archaeological sites within the probable homeland of Bantu languages. One individual ...

    • The complete genome sequence of a Neandertal from the Altai Mountains 

      Prüfer, Kay; Racimo, Fernando; Patterson, Nick; Jay, Flora; Sankararaman, Sriram; Sawyer, Susanna; Heinze, Anja; Renaud, Gabriel; Sudmant, Peter H.; de Filippo, Cesare; Li, Heng; Mallick, Swapan; Dannemann, Michael; Fu, Qiaomei; Kircher, Martin; Kuhlwilm, Martin; Lachmann, Michael; Meyer, Matthias; Ongyerth, Matthias; Siebauer, Michael; Theunert, Christoph; Tandon, Arti; Moorjani, Priya; Pickrell, Joseph; Mullikin, James C.; Vohr, Samuel H.; Green, Richard E.; Hellmann, Ines; Johnson, Philip L. F.; Blanche, Hélène; Cann, Howard; Kitzman, Jacob O.; Shendure, Jay; Eichler, Evan E.; Lein, Ed S.; Bakken, Trygve E.; Golovanova, Liubov V.; Doronichev, Vladimir B.; Shunkov, Michael V.; Derevianko, Anatoli P.; Viola, Bence; Slatkin, Montgomery; Reich, David; Kelso, Janet; Pääbo, Svante (2014)
      We present a high-quality genome sequence of a Neandertal woman from Siberia. We show that her parents were related at the level of half siblings and that mating among close relatives was common among her recent ancestors. ...

    • A direct characterization of human mutation based on microsatellites 

      Sun, James Xin; Helgason, Agnar; Masson, Gisli; Ebenesersdóttir, Sigríđur Sunna; Li, Heng; Mallick, Swapan; Gnerre, Sante; Patterson, Nick; Kong, Augustine; Reich, David Emil; Stefansson, Kari (2012)
      Mutations are the raw material of evolution, but have been difficult to study directly. We report the largest study of new mutations to date: 2,058 germline changes discovered by analyzing 85,289 Icelanders at 2,477 ...

    • An early modern human from Romania with a recent Neanderthal ancestor 

      Fu, Qiaomei; Hajdinjak, Mateja; Moldovan, Oana Teodora; Constantin, Silviu; Mallick, Swapan; Skoglund, Pontus; Patterson, Nick; Rohland, Nadin; Lazaridis, Iosif; Nickel, Birgit; Viola, Bence; Prüfer, Kay; Meyer, Matthias; Kelso, Janet; Reich, David; Pääbo, Svante (2015)
      Neanderthals are thought to have disappeared in Europe ~39,000–41,000 years ago but they have contributed one to three percent of the DNA of present-day people in Eurasia1. Here, we analyze DNA from a 37,000–42,000-year-old2 ...

    • Ethics of DNA Research on Human Remains: Five Globally Applicable Guidelines 

      Alpaslan-Roodenberg, Songül; Anthony, David; Babiker, Hiba; Bánffy, Eszter; Booth, Thomas; Capone, Patricia; Deshpande-Mukherjee, Arati; Eisenmann, Stefanie; Fehren-Schmitz, Lars; Frachetti, Michael; Fujita, Ricardo; Frieman, Catherine J.; Fu, Qiaomei; Gibbon, Victoria; Haak, Wolfgang; Hajdinjak, Mateja; Hofmann, Kerstin; Holguin, Brian; Inomata, Takeshi; Kanzawa-Kiriyama, Hideaki; Keegan, William; Kelso, Janet; Krause, Johannes; Kumaresan, Ganesan; Kusimba, Chapurukha; Kusimba, Sibel; Lalueza-Fox, Carles; Llamas, Bastien; MacEachern, Scott; Mallick, Swapan; Matsumura, Hirofumi; Morales-Arce, Ana Y.; Motuzaite Matuzeviciute, Giedre; Mushrif-Tripathy, Veena; Nakatsuka, Nathan; Nores, Rodrigo; Ogola, Christine; Okumura, Mercedes; Patterson, Nick; Pinhasi, Ron; Prasad, Samayamantri P. R.; Prendergast, Mary E.; Punzo, Jose Luis; Reich, David; Sawafuji, Rikai; Sawchuk, Elizabeth; Schiffels, Stephan; Sedig, Jakob; Shnaider, Svetlana; Sirak, Kendra; Skoglund, Pontus; Slon, Viviane; Snow, Meradeth; Soressi, Marie; Spriggs, Matthew; Stockhammer, Philipp; Szécsényi-Nagy, Anna; Thangaraj, Kumarasamy; Tiesler, Vera; Tobler, Ray; Wang, Chuan-Chao; Warinner, Christina; Yasawardene, Surangi; Zahir, Muhammad (Nature, 2021-10-20)
      We are a group of archaeologists, anthropologists, curators, and geneticists representing 24 countries and diverse global communities, most of whom met in November 2020 in a virtual workshop dedicated to ethics in ancient ...

    • A framework for the interpretation of de novo mutation in human disease 

      Samocha, Kaitlin E.; Robinson, Elise B.; Sanders, Stephan J.; Stevens, Christine; Sabo, Aniko; McGrath, Lauren M.; Kosmicki, Jack A.; Rehnström, Karola; Mallick, Swapan; Kirby, Andrew; Wall, Dennis P.; MacArthur, Daniel G.; Gabriel, Stacey B.; dePristo, Mark; Purcell, Shaun M.; Palotie, Aarno; Boerwinkle, Eric; Buxbaum, Joseph D.; Cook, Edwin H.; Gibbs, Richard A.; Schellenberg, Gerard D.; Sutcliffe, James S.; Devlin, Bernie; Roeder, Kathryn; Neale, Benjamin M.; Daly, Mark J. (2014)
      Spontaneously arising (‘de novo’) mutations play an important role in medical genetics. For diseases with extensive locus heterogeneity – such as autism spectrum disorders (ASDs) – the signal from de novo mutations (DNMs) ...

    • Genetic evidence for two founding populations of the Americas 

      Skoglund, Pontus; Mallick, Swapan; Bortolini, Maria Cátira; Chennagiri, Niru; Hünemeier, Tábita; Petzl-Erler, Maria Luiza; Salzano, Francisco Mauro; Patterson, Nick; Reich, David (2015)
      Genetic studies have been consistent with a single common origin of Native American groups from Central and South America1-4. However, some morphological studies have suggested a more complex picture, whereby the northeast ...

    • A Genetic History of the Pre-Contact Caribbean 

      Fernandes, Daniel M.; Sirak, Kendra; Ringbauer, Harald; Sedig, Jakob; Rohland-Pinello, Nadin; Cheronet, Olivia; Mah, Matthew; Mallick, Swapan; Olalde, Inigo; Culleton, Brendan J.; Adamski, Nicole; Bernardos, Rebecca; Bravo, Guillermo; Broomandkhoshbacht, Nasreen; Callan, Kimberly; Candilio, Francesca; Demetz, Lea; Carlson, Kellie; Eccles, Laurie; Freilich, Suzanne; George, Richard J.; Lawson, Ann Marie; Mandl, Kirsten; Marzaioli, Fabio; McCool, Weston C.; Oppenheimer, Jonas; Özdogan, Kadir T.; Schattke, Constanze; Schmidt, Ryan; Stewardson, Kristin; Terrasi, Filippo; Zalzala, Fatma; Antúnez, Carlos Arredondo; Canosa, Ercilio Vento; Colten, Roger; Cucina, Andrea; Genchi, Francesco; Kraan, Claudia; La Pastina, Francesco; Lucci, Michaela; Maggiolo, Marcio Veloz; Marcheco-Teruel, Beatriz; Maria, Clenis Tavarez; Martínez, Christian; París, Ingeborg; Pateman, Michael; Simms, Tanya; Sivoli, Carlos Garcia; Vilar, Miguel; Kennett, Douglas J.; Keegan, William; Coppa, Alfredo; Lipson, Mark; Pinhasi, Ron; Reich, David (Springer Nature, 2020-12-23)
      Humans settled the Caribbean ~6,000 years ago, with ceramic use and intensified agriculture marking a shift from the Archaic to the Ceramic Age ~2,500 years ago. We report genome-wide data from 174 individuals from The ...

    • Genome-wide patterns of selection in 230 ancient Eurasians 

      Mathieson, Iain; Lazaridis, Iosif; Rohland, Nadin; Mallick, Swapan; Patterson, Nick; Roodenberg, Songül Alpaslan; Harney, Eadaoin; Stewardson, Kristin; Fernandes, Daniel; Novak, Mario; Sirak, Kendra; Gamba, Cristina; Jones, Eppie R.; Llamas, Bastien; Dryomov, Stanislav; Pickrel, Joseph; Arsuaga, Juan Luís; de Castro, José María Bermúdez; Carbonell, Eudald; Gerritsen, Fokke; Khokhlov, Aleksandr; Kuznetsov, Pavel; Lozano, Marina; Meller, Harald; Mochalov, Oleg; Moiseyev, Vayacheslav; Rojo Guerra, Manuel A.; Roodenberg, Jacob; Vergès, Josep Maria; Krause, Johannes; Cooper, Alan; Alt, Kurt W.; Brown, Dorcas; Anthony, David; Lalueza-Fox, Carles; Haak, Wolfgang; Pinhasi, Ron; Reich, David (2016)
      Ancient DNA makes it possible to directly witness natural selection by analyzing samples from populations before, during and after adaptation events. Here we report the first scan for selection using ancient DNA, capitalizing ...

    • Genomic DNA Sequences from Mastodon and Woolly Mammoth Reveal Deep Speciation of Forest and Savanna Elephants 

      Green, Richard E.; Georgiadis, Nicholas J.; Roca, Alfred L.; Hofreiter, Michael; Penny, David; Rohland, Nadin; Reich, David Emil; Mallick, Swapan; Meyer, Matthias (Public Library of Science, 2010)
      To elucidate the history of living and extinct elephantids, we generated 39,763 bp of aligned nuclear DNA sequence across 375 loci for African savanna elephant, African forest elephant, Asian elephant, the extinct American ...

    • Gibbon genome and the fast karyotype evolution of small apes 

      Carbone, Lucia; Harris, R. Alan; Gnerre, Sante; Veeramah, Krishna R.; Lorente-Galdos, Belen; Huddleston, John; Meyer, Thomas J.; Herrero, Javier; Roos, Christian; Aken, Bronwen; Anaclerio, Fabio; Archidiacono, Nicoletta; Baker, Carl; Barrell, Daniel; Batzer, Mark A.; Beal, Kathryn; Blancher, Antoine; Bohrson, Craig L.; Brameier, Markus; Campbell, Michael S.; Capozzi, Oronzo; Casola, Claudio; Chiatante, Giorgia; Cree, Andrew; Damert, Annette; de Jong, Pieter J.; Dumas, Laura; Fernandez-Callejo, Marcos; Flicek, Paul; Fuchs, Nina V.; Gut, Marta; Gut, Ivo; Hahn, Matthew W.; Hernandez-Rodriguez, Jessica; Hillier, LaDeana W.; Hubley, Robert; Ianc, Bianca; Izsvák, Zsuzsanna; Jablonski, Nina G.; Johnstone, Laurel M.; Karimpour-Fard, Anis; Konkel, Miriam K.; Kostka, Dennis; Lazar, Nathan H.; Lee, Sandra L.; Lewis, Lora R.; Liu, Yue; Locke, Devin P.; Mallick, Swapan; Mendez, Fernando L.; Muffato, Matthieu; Nazareth, Lynne V.; Nevonen, Kimberly A.; O,Bleness, Majesta; Ochis, Cornelia; Odom, Duncan T.; Pollard, Katherine S.; Quilez, Javier; Reich, David; Rocchi, Mariano; Schumann, Gerald G.; Searle, Stephen; Sikela, James M.; Skollar, Gabriella; Smit, Arian; Sonmez, Kemal; Hallers, Boudewijn ten; Terhune, Elizabeth; Thomas, Gregg W.C.; Ullmer, Brygg; Ventura, Mario; Walker, Jerilyn A.; Wall, Jeffrey D.; Walter, Lutz; Ward, Michelle C.; Wheelan, Sarah J.; Whelan, Christopher W.; White, Simon; Wilhelm, Larry J.; Woerner, August E.; Yandell, Mark; Zhu, Baoli; Hammer, Michael F.; Marques-Bonet, Tomas; Eichler, Evan E.; Fulton, Lucinda; Fronick, Catrina; Muzny, Donna M.; Warren, Wesley C.; Worley, Kim C.; Rogers, Jeffrey; Wilson, Richard K.; Gibbs, Richard A. (2014)
      Gibbons are small arboreal apes that display an accelerated rate of evolutionary chromosomal rearrangement and occupy a key node in the primate phylogeny between Old World monkeys and great apes. Here we present the assembly ...

    • The landscape of Neandertal ancestry in present-day humans 

      Sankararaman, Sriram; Mallick, Swapan; Dannemann, Michael; Prüfer, Kay; Kelso, Janet; Pääbo, Svante; Patterson, Nick; Reich, David (2014)
      Analyses of Neandertal genomes have revealed that Neandertals have contributed genetic variants to modern humans1–2. The antiquity of Neandertal gene flow into modern humans means that regions that derive from Neandertals ...

    • Large-Scale Migration into Britain During the Middle to Late Bronze Age 

      Patterson, Nicholas; Isakov, Michael; Booth, Thomas; Büster, Lindsey; Fischer, Claire-Elise; Olalde, Inigo; Ringbauer, Harald; Akbari, Ali; Cheronet, Olivia; Bleasdale, Madeleine; Adamski, Nicole; Altena, Eveline; Bernardos, Rebecca; Brace, Selina; Broomandkhoshbacht, Nasreen; Callan, Kimberly; Candilio, Francesca; Culleton, Brendan; Curtis, Elizabeth; Demetz, Lea; Carlson, Kellie; Edwards, C.; Fernandes, Daniel M.; Foody, M. George B.; Freilich, Suzanne; Goodchild, Helen; Kearns, Aisling; Lawson, Ann Marie; Lazaridis, Iosif; Mah, Matthew; Mallick, Swapan; Mandl, Kirsten; Micco, Adam; Michel, Megan; Morante, Guillermo Bravo; Oppenheimer, Jonas; Özdoğan, Kadir Toykan; Qiu, Lijun; Schattke, Constanze; Stewardson, Kristin; Workman, James; Zalzala, Fatma; Zhang, Zhao; Agustí, Bibiana; Allen, Tim; Almássy, Katalin; Amkreutz, Luc; Ash, Abigail; Baillif-Ducros, Christèle; Barclay, Alistair; Bartosiewicz, László; Baxter, Katherine; Bernert, Zsolt; Blažek, Jan; Bodružić, Mario; Boissinot, Philippe; Bonsall, Clive; Bradley, Pippa; Brittain, Marcus; Brookes, Alison; Brown, Fraser; Brown, Lisa; Budd, Chelsea; Burmaz, Josip; Canet, Sylvain; Carnicero-Cáceres, Silvia; Čaušević-Bully, Morana; Chamberlain, Andrew; Chauvin, Sébastien; Clough, Sharon; Čondić, Natalija; Coppa, Alfredo; Craig, Oliver; Črešnar, Matija; Cummings, Vicki; Czifra, Szabolcs; Danielisová, Alžběta; Daniels, Robin; Davies, Alex; de Jersey, Philip; Deacon, Jody; Deminger, Csilla; Ditchfield, Peter W.; Dizdar, Marko; Dobeš, Miroslav; Dobisíková, Miluše; Domboróczki, László; Drinkall, Gail; Đukić, Ana; Ernée, Michal; Evans, Christopher; Evans, Jane; Fernández-Götz, Manuel; Filipović, Slavica; Fitzpatrick, Andrew; Fokkens, Harry; Fowler, Chris; Fox, Allison; Gallina, Zsolt; Gamble, Michelle; González Morales, Manuel R.; González-Rabanal, Borja; Green, Adrian; Gyenesei, Katalin; Habermehl, Diederick; Hajdu, Tamás; Hamilton, Derek; Harris, James; Hayden, Chris; Hendriks, Joep; Hernu, Bénédicte; Hey, Gill; Horňák, Milan; Ilon, Gábor; Istvánovits, Eszter; Jones, Andy M.; Blečić Kavur, Martina; Kazek, Kevin; Kenyon, Robert A.; Khreisheh, Amal; Kiss, Viktória; Kleijne, Jos; Knight, Mark; Kootker, Lisette M.; Kovács, Péter F.; Kozubová, Anita; Kulcsár, Gabriella; Kulcsár, Valéria; Le Pennec, Christophe; Legge, Michael; Leivers, Matt; Loe, Louise; López-Costas, Olalla; Lord, Tom; Los, Dženi; Lyall, James; Marín-Arroyo, Ana B.; Mason, Philip; Matošević, Damir; Maxted, Andy; McIntyre, Lauren; McKinley, Jacqueline; McSweeney, Kathleen; Meijlink, Bernard; Mende, Balázs G.; Menđušić, Marko; Metlička, Milan; Meyer, Sophie; Mihovilić, Kristina; Milasinovic, Lidija; Minnitt, Steve; Moore, Joanna; Morley, Geoff; Mullan, Graham; Musilová, Margaréta; Neil, Benjamin; Nicholls, Rebecca; Novak, Mario; Pala, Maria; Papworth, Martin; Paresys, Cécile; Patten, Ricky; Perkić, Domagoj; Pesti, Krisztina; Petit, Alba; Petriščáková, Katarína; Pichon, Coline; Pickard, Catriona; Pilling, Zoltán; Price, T. Douglas; Radović, Siniša; Redfern, Rebecca; Resutík, Branislav; Rhodes, Daniel T.; Richards, Martin B.; Roberts, Amy; Roefstra, Jean; Sankot, Pavel; Šefčáková, Alena; Sheridan, Alison; Skae, Sabine; Šmolíková, Miroslava; Somogyi, Krisztina; Somogyvári, Ágnes; Stephens, Mark; Szabó, Géza; Szécsényi-Nagy, Anna; Szeniczey, Tamás; Tabor, Jonathan; Tankó, Károly; Tavarez Maria, Clenis; Terry, Rachel; Teržan, Biba; Teschler-Nicola, Maria; Torres-Martínez, Jesús F.; Trapp, Julien; Turle, Ross; Ujvári, Ferenc; van der Heiden, Menno; Veleminsky, Petr; Veselka, Barbara; Vytlačil, Zdeněk; Waddington, Clive; Ware, Paula; Wilkinson, Paul; Wilson, Linda; Wiseman, Rob; Young, Eilidh; Zaninović, Joško; Žitňan, Andrej; Lalueza-Fox, Carles; de Knijff, Peter; Barnes, Ian; Halkon, Peter; Thomas, Mark G.; Kennett, Douglas J.; Cunliffe, Barry; Lillie, Malcolm; Rohland-Pinello, Nadin; Pinhasi, Ron; Armit, Ian; Reich, David (SpringerNature, 2021-12-22)
      Present-day people from England and Wales harbour more ancestry derived from Early European Farmers (EEF) than people of the Early Bronze Age1. To understand this, we generated genome-wide data from 793 individuals, ...

    • Palaeo-Eskimo Genetic Ancestry and the Peopling of Chukotka and North America 

      Flegontov, Pavel; Rohland-Pinello, Nadin; Mallick, Swapan; Flegontova, Olga; Jeong, Choongwon; Keating, Denise; Lawson, Ann; Oppenheimer, Jonas; Raff, Jennifer; Skoglund, Pontus; Stewardson, Kristin; Vasilyev, Sergey; Veselovskaya, Elizaveta; Hayes, M. Geoffrey; Krause, Johannes; Pinhasi, Ron; Reich, David; Changmai, Piya; Adamski, Nicole; Bolnick, Deborah; Culleton, Brendan; Harper, Thomas; Kennett, Douglas; Kim, Alexander; Lamnidis, Thiseas; Olalde, Iñigo; Potter, Ben; Sattler, Robert; Vajda, Edwards; O’Rourke, Dennis; Schiffels, Stephan; Broomandkhoshbacht, Nasreen; Candilio, Francesca; Friesen, Max; Altınışık, Ezgi (Springer Science and Business Media LLC, 2019-06)
      Paleo-Eskimos were the first people to settle vast regions of the American Arctic around 5,000 years ago, and were subsequently joined and largely displaced around 1,000 years ago by ancestors of present-day Inuit and ...

    • A Re-Appraisal of the Early Andean Human Remains from Lauricocha in Peru 

      Fehren-Schmitz, Lars; Llamas, Bastien; Lindauer, Susanne; Tomasto-Cagigao, Elsa; Kuzminsky, Susan; Rohland, Nadin; Santos, Fabrício R.; Kaulicke, Peter; Valverde, Guido; Richards, Stephen M.; Nordenfelt, Susanne; Seidenberg, Verena; Mallick, Swapan; Cooper, Alan; Reich, David; Haak, Wolfgang (Public Library of Science, 2015)
      The discovery of human remains from the Lauricocha cave in the Central Andean highlands in the 1960’s provided the first direct evidence for human presence in the high altitude Andes. The skeletons found at this site were ...

    • The Simons Genome Diversity Project: 300 genomes from 142 diverse populations 

      Mallick, Swapan; Li, Heng; Lipson, Mark Israel; Mathieson, Iain; Gymrek, Melissa Ann; Racimo, Fernando; Zhao, Mengyao; Chennagiri, Niru; Nordenfelt, Susanne; Tandon, Arti; Skoglund, Pontus R; Lazaridis, Iosif; Sankararaman, Sriram; Fu, Qiaomei; Rohland-Pinello, Nadin; Renaud, Gabriel; Erlich, Yaniv; Willems, Thomas; Gallo, Carla; Spence, Jeffrey P.; Song, Yun; Poletti, Giovanni; Balloux, Francois; van Driem, George; de Knijff, Peter; Romero, Irene Gallego; Jha, Aashish R.; Behar, Doron M.; Bravi, Claudio M.; Capelli, Cristian; Hervig, Tor; Moreno-Estrada, Andres; Posukh, Olga L.; Balanovska, Elena; Balanovsky, Oleg; Karachanak-Yankova, Sena; Sahakyan, Hovhannes; Toncheva, Draga; Yepiskoposyan, Levon; Tyler-Smith, Chris; Xue, Yali; Abdullah, M. Syafiq; Ruiz-Linares, Andres; Beall, Cynthia M.; Di Rienzo, Anna; Jeong, Choongwon; Starikovskaya, Elena B.; Metspalu, Ene; Parik, Jüri; Villems, Richard; Henn, Brenna M.; Hodoglugil, Ugur; Mahley, Robert; Sajantila, Antti; Stamatoyannopoulos, George; Wee, Joseph T. S.; Khusainova, Rita; Khusnutdinova, Elza; Litvinov, Sergey; Ayodo, George; Comas, David; Hammer, Michael F.; Kivisild, Toomas; Klitz, William; Winkler, Cheryl A.; Labuda, Damian; Bamshad, Michael; Jorde, Lynn B.; Tishkoff, Sarah A.; Watkins, W. Scott; Metspalu, Mait; Dryomov, Stanislav; Sukernik, Rem; Singh, Lalji; Thangaraj, Kumarasamy; Pääbo, Svante; Kelso, Janet; Patterson, Nick; Reich, David Emil (Springer Nature, 2016)
      We report the Simons Genome Diversity Project (SGDP) dataset: high quality genomes from 300 individuals from 142 diverse populations. These genomes include at least 5.8 million base pairs that are not present in the human ...