Browsing by Author "Tang, Shaojun"
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f-divergence cutoff index to simultaneously identify differential expression in the integrated transcriptome and proteome
Tang, Shaojun; Hemberg, Martin; Cansizoglu, Ertugrul; Belin, Stephane; Kosik, Kenneth; Kreiman, Gabriel; Steen, Hanno; Steen, Judith (Oxford University Press (OUP), 2016)The ability to integrate 'omics' (i.e., transcriptomics and proteomics) is becoming increasingly important to the understanding of regulatory mechanisms. There are currently no tools available to identify differentially ... -
PASTA: splice junction identification from RNA-Sequencing data
Tang, Shaojun; Riva, Alberto (BioMed Central, 2013)Background: Next generation transcriptome sequencing (RNA-Seq) is emerging as a powerful experimental tool for the study of alternative splicing and its regulation, but requires ad-hoc analysis methods and tools. PASTA ...