Browsing by Author "Sadreyev, Ruslan"
Now showing items 1-16 of 16
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Astrocytic interleukin-3 programs microglia and limits Alzheimer’s disease
McAlpine, Cameron; Park, Joseph; Griciuc, Ana; Kim, Eunhee; Choi, Se Hoon; Iwamoto, Yoshiko; Kiss, Máté G.; Christie, Kathleen; Vinegoni, Claudio; Poller, Wolfram; Mindur, John; Chan, Christopher; He, Shun; Janssen, Henrike; Wong, Lai Ping; Downey, Jeffrey; Singh, Sumnima; Anzai, Atsushi; Kahles, Florian; Jorfi, Mehdi; Feruglio, Paulo; Sadreyev, Ruslan; Weissleder, Ralph; Kleinstiver, Benjamin; Nahrendorf, Matthias; Tanzi, Rudolph; Swirski, Filip (Springer Science and Business Media LLC, 2021-07-14)Communication within the glial cell ecosystem is essential to neuronal and brain health1–3. The influence of glial cells on β-amyloid (Aβ) and neurofibrillary tau accumulation and clearance in Alzheimer’s disease (AD) is ... -
BRCA1 establishes DNA damage signaling and pericentric heterochromatin of the X chromosome in male meiosis
Broering, Tyler J.; Alavattam, Kris G.; Sadreyev, Ruslan I.; Ichijima, Yosuke; Kato, Yasuko; Hasegawa, Kazuteru; Camerini-Otero, R. Daniel; Lee, Jeannie T.; Andreassen, Paul R.; Namekawa, Satoshi H. (The Rockefeller University Press, 2014)During meiosis, DNA damage response (DDR) proteins induce transcriptional silencing of unsynapsed chromatin, including the constitutively unsynapsed XY chromosomes in males. DDR proteins are also implicated in double strand ... -
Chromatin topology is coupled to Polycomb group protein subnuclear organization
Wani, Ajazul H.; Boettiger, Alistair N.; Schorderet, Patrick; Ergun, Ayla; Münger, Christine; Sadreyev, Ruslan I.; Zhuang, Xiaowei; Kingston, Robert E.; Francis, Nicole J. (Nature Publishing Group, 2016)The genomes of metazoa are organized at multiple scales. Many proteins that regulate genome architecture, including Polycomb group (PcG) proteins, form subnuclear structures. Deciphering mechanistic links between protein ... -
Enhancer regions show high histone H3.3 turnover that changes during differentiation
Deaton, Aimee M; Gómez-Rodríguez, Mariluz; Mieczkowski, Jakub; Tolstorukov, Michael Y; Kundu, Sharmistha; Sadreyev, Ruslan I; Jansen, Lars ET; Kingston, Robert E (eLife Sciences Publications, Ltd, 2016)The organization of DNA into chromatin is dynamic; nucleosomes are frequently displaced to facilitate the ability of regulatory proteins to access specific DNA elements. To gain insight into nucleosome dynamics, and to ... -
Identifying candidate ncRNAs that direct changes in chromatin structure
Ray, Mridula Kumari; Wang, Yanqun; Borowsky, Mark L; Sadreyev, Ruslan; Kingston, Robert Edward (BioMed Central, 2013) -
Inducible Histone K-to-M Mutations are Dynamic Tools to Probe the Physiological Role of Site-Specific Histone Methylation In Vitro and In Vivo
Brumbaugh, Justin; Kim, Ik Soo; Ji, Fei; Huebner, Aaron; Di Stefano, Bruno; Schwarz, Benjamin A.; Charlton, Jocelyn; Coffey, Amy; Choi, Jiho; Walsh, Ryan M.; Schindler, Jeffrey W.; Anselmo, Anthony; Meissner, Alexander; Sadreyev, Ruslan; Bernstein, Bradley; Hock, Hanno; Hochedlinger, Konrad (Springer Science and Business Media LLC, 2019-10-28)Development and differentiation are associated with profound changes to histone modifications, yet their in vivo function remains incompletely understood. Here, we generated mouse models expressing inducible histone H3 ... -
Influence of maternal breast milk ingestion on acquisition of the intestinal microbiome in preterm infants
Gregory, Katherine E.; Samuel, Buck S.; Houghteling, Pearl; Shan, Guru; Ausubel, Frederick M.; Sadreyev, Ruslan I.; Walker, W. Allan (BioMed Central, 2016)Background: The initial acquisition and early development of the intestinal microbiome during infancy are important to human health across the lifespan. Mode of birth, antibiotic administration, environment of care, and ... -
IRF3 and type I interferons fuel a fatal response to myocardial infarction
King, Kevin R; Aguirre, Aaron Dominic; Ye, Yu-Xiang; Sun, Yuan; Roh, Jason David; Ng, Richard Patrick; Kohler, Rainer H.; Arlauckas, Sean Philip; Iwamoto, Yoshiko; Savol, Andrej J; Sadreyev, Ruslan; Kelly, Mark; Fitzgibbons, Timothy P; Fitzgerald, Katherine A; Mitchison, Timothy J.; Libby, Peter; Nahrendorf, Matthias; Weissleder, Ralph (Springer Nature, 2017)Interferon regulatory factor 3 (IRF3) and type I interferons (IFNs) protect against infections and cancer, but excessive IRF3 activation and type I IFN production cause autoinflammatory conditions such as Aicardi–Goutières ... -
Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells
Choi, Jiho; Huebner, Aaron; Clement, Kendell; Walsh, Ryan M.; Savol, Andrej J; Lin, Kaixuan; Gu, Hongcang; Di Stefano, Bruno; Brumbaugh, Justin; Kim, Sang-Yong; Sharif, Jafar; Rose, Christopher M.; Mohammad, Arman; Odajima, Junko; Charron, Jean; Shioda, Toshihiro; Gnirke, Andreas; Gygi, Steven P.; Koseki, Haruhiko; Sadreyev, Ruslan; Xiao, Andrew; Meissner, Alexander; Hochedlinger, Konrad (Springer Nature, 2017)Concomitant activation of the Wnt pathway and suppression of Mapk signalling by two small molecule inhibitors (2i) in the presence of leukaemia inhibitory factor (LIF) (hereafter termed 2i/L) induces a naive state in mouse ... -
The Schizophrenia-Associated Variant in SLC39A8 Alters Protein Glycosylation in the Mouse Brain
Mealer, Robert; Williams, Sarah E.; Noel, Maxence; Yang, Bo; D'Souza, Alexandria; Nakata, Toru; Graham, Daniel B.; Creasey, Elizabeth A.; Cetinbas, Murat; Sadreyev, Ruslan; Scolnick, Edward; Woo, Christina; Smoller, Jordan; Xavier, Ramnik; Cummings, Richard (Springer Science and Business Media LLC, 2022-03-08)A missense mutation (A391T) in the manganese transporter SLC39A8 is strongly associated with schizophrenia in genomic studies, though the molecular connection to the brain remains hypothetical. Human carriers of A391T have ... -
SIKs control osteocyte responses to parathyroid hormone
Wein, Marc N.; Liang, Yanke; Goransson, Olga; Sundberg, Thomas B.; Wang, Jinhua; Williams, Elizabeth A.; O'Meara, Maureen J.; Govea, Nicolas; Beqo, Belinda; Nishimori, Shigeki; Nagano, Kenichi; Brooks, Daniel J.; Martins, Janaina S.; Corbin, Braden; Anselmo, Anthony; Sadreyev, Ruslan; Wu, Joy Y.; Sakamoto, Kei; Foretz, Marc; Xavier, Ramnik J.; Baron, Roland; Bouxsein, Mary L.; Gardella, Thomas J.; Divieti-Pajevic, Paola; Gray, Nathanael S.; Kronenberg, Henry M. (Nature Publishing Group, 2016)Parathyroid hormone (PTH) activates receptors on osteocytes to orchestrate bone formation and resorption. Here we show that PTH inhibition of SOST (sclerostin), a WNT antagonist, requires HDAC4 and HDAC5, whereas PTH ... -
Single-cell transcriptional analysis of normal, aberrant, and malignant hematopoiesis in zebrafish
Moore, Finola E.; Garcia, Elaine G.; Lobbardi, Riadh; Jain, Esha; Tang, Qin; Moore, John C.; Cortes, Mauricio; Molodtsov, Aleksey; Kasheta, Melissa; Luo, Christina C.; Garcia, Amaris J.; Mylvaganam, Ravi; Yoder, Jeffrey A.; Blackburn, Jessica S.; Sadreyev, Ruslan I.; Ceol, Craig J.; North, Trista E.; Langenau, David M. (The Rockefeller University Press, 2016)Hematopoiesis culminates in the production of functionally heterogeneous blood cell types. In zebrafish, the lack of cell surface antibodies has compelled researchers to use fluorescent transgenic reporter lines to label ... -
Sox2 Suppresses Gastric Tumorigenesis in Mice
Sarkar, Abby; Huebner, Aaron; Sulahian, Rita; Anselmo, Anthony; Xu, Xinsen; Flattery, Kyle; Desai, Niyati; Sebastian, Carlos; Yram, Mary Anna; Arnold, Katrin; Rivera, Miguel; Mostoslavsky, Raul; Bronson, Roderick; Bass, Adam; Sadreyev, Ruslan; Shivdasani, Ramesh; Hochedlinger, Konrad (Elsevier BV, 2016-08-16)Sox2 expression marks gastric stem and progenitor cells, raising important questions regarding the genes regulated by Sox2 and the role of Sox2 itself during stomach homeostasis and disease. By using ChIP-seq analysis, we ... -
Tumor cells can follow distinct evolutionary paths to become resistant to epidermal growth factor receptor inhibition
Hata, Aaron N; Niederst, Matthew J; Archibald, Hannah L; Gomez-Caraballo, Maria; Siddiqui, Faria M; Mulvey, Hillary E; Maruvka, Yosef E; Ji, Fei; Bhang, Hyo-eun C; Radhakrishna, Viveksagar Krishnamurthy; Siravegna, Giulia; Hu, Haichuan; Raoof, Sana; Lockerman, Elizabeth; Kalsy, Anuj; Lee, Dana; Keating, Celina L; Ruddy, David A; Damon, Leah J; Crystal, Adam S; Costa, Carlotta; Piotrowska, Zofia; Bardelli, Alberto; Iafrate, Anthony J; Sadreyev, Ruslan I; Stegmeier, Frank; Getz, Gad; Sequist, Lecia V; Faber, Anthony C; Engelman, Jeffrey A (2016)Although mechanisms of acquired resistance of EGFR mutant non-small cell lung cancers to EGFR inhibitors have been identified, little is known about how resistant clones evolve during drug therapy. Here, we observe that ... -
A Unique Subset of Glycolytic Tumour-Propagating Cells Drives Squamous Cell Carcinoma
Choi, Jeeeun; Sebastian, Carlos; Ferrer, Christina M.; Lewis, Caroline A.; Sade-Feldman, Moshe; LaSalle, Thomas; Gonye, Anna; Gimenez-Cassina Lopez, Begona; Abdelmoula, Walid M.; Regan, Michael S.; Cetinbas, Murat; Pascual, Gloria; Wojtkiewicz, Gregory; Silveira, Giorgia G.; Boon, Ruben; Ross, Kenneth; Tirosh, Itay; Saladi, Srinivas V.; Ellisen, Leif; Sadreyev, Ruslan; Benitah, Salvador Aznar; Agar, Nathalie; Hacohen, Nir; Mostoslavsky, Raul (Springer Science and Business Media LLC, 2021-02-22) -
X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription
Yildirim, Eda; Sadreyev, Ruslan I.; Pinter, Stefan F.; Lee, Jeannie T. (2013)Dosage compensation in mammals occurs at two levels. In addition to balancing X-chromosome dosage between males and females via X-inactivation, mammals also balance dosage of Xs and autosomes. It has been proposed that ...