Now showing items 1-5 of 5

    • Annotation of the Drosophila Melanogaster Euchromatic Genome: A Systematic Review 

      Misra, Sima; Mungall, Christopher J; Campbell, Kathryn S; Hradecky, Pavel; Huang, Yanmei; Kaminker, Joshua S; Millburn, Gillian H; Prochnik, Simon E; Tupy, Jonathan L; Whitfield, Eleanor J; Bayraktaroglu, Leyla; Bettencourt, Brian R; Celniker, Susan E; de Grey, Aubrey DNJ; Drysdale, Rachel A; Harris, Nomi L; Richter, John; Shu, ShengQiang; Stapleton, Mark; Yamada, Chihiro; Ashburner, Michael; Rubin, Gerald M; Lewis, Suzanna E; Crosby, Madeline; Matthews, Beverley; Smith, Christopher D; Berman, Benjamin P; Russo, Susan; Schroeder, Andrew; Gelbart, William Martin (BioMed Central, 2002)
      The recent completion of the Drosophila melanogaster genomic sequence to high quality, and the availability of a greatly expanded set of Drosophila cDNA sequences, afforded FlyBase the opportunity to significantly improve ...
    • Apollo: A Sequence Annotation Editor 

      Lewis, SE; Searle, SMJ; Iyer, V; Wiel, C; Bayraktaroglu, L; Birney, E; Kaminker, JS; Prochnik, SE; Smith, CD; Tupy, JL; Rubin, GM; Mungall, CJ; Clamp, ME; Harris, N; Gibson, M; Richter, J; Crosby, Madeline; Matthews, Beverley; Misra, S (BioMed Central, 2002)
      The well-established inaccuracy of purely computational methods for annotating genome sequences necessitates an interactive tool to allow biological experts to refine these approximations by viewing and independently ...
    • FlyBase: genomes by the dozen 

      Crosby, Madeline; Goodman, Joshua L.; Strelets, Victor B.; Zhang, Peili; Gelbart, William Martin; The FlyBase Consortium (Oxford University Press, 2006)
      FlyBase (http://flybase.org/) is the primary database of genetic and genomic data for the insect family Drosophilidae. Historically, Drosophila melanogaster has been the most extensively studied species in this family, but ...
    • Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data 

      Matthews, Beverley B.; dos Santos, Gilberto; Crosby, Madeline A.; Emmert, David B.; St. Pierre, Susan E.; Gramates, L. Sian; Zhou, Pinglei; Schroeder, Andrew J.; Falls, Kathleen; Strelets, Victor; Russo, Susan M.; Gelbart, William M. (Genetics Society of America, 2015)
      We report the current status of the FlyBase annotated gene set for Drosophila melanogaster and highlight improvements based on high-throughput data. The FlyBase annotated gene set consists entirely of manually annotated ...
    • Gene Model Annotations for Drosophila melanogaster: The Rule-Benders 

      Crosby, Madeline A.; Gramates, L. Sian; dos Santos, Gilberto; Matthews, Beverley B.; St. Pierre, Susan E.; Zhou, Pinglei; Schroeder, Andrew J.; Falls, Kathleen; Emmert, David B.; Russo, Susan M.; Gelbart, William M. (Genetics Society of America, 2015)
      In the context of the FlyBase annotated gene models in Drosophila melanogaster, we describe the many exceptional cases we have curated from the literature or identified in the course of FlyBase analysis. These range from ...