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Why is Real-World Visual Object Recognition Hard?
(Public Library of Science, 2008)
Progress in understanding the brain mechanisms underlying vision requires the construction of computational models that not only emulate the brain's anatomy and physiology, but ultimately match its performance on visual ...
Order and Stochastic Dynamics in Drosophila Planar Cell Polarity
(Public Library of Science, 2009)
Cells in the wing blade of Drosophila melanogaster exhibit an in-plane polarization causing distal orientation of hairs. Establishment of the Planar Cell Polarity (PCP) involves intercellular interactions as well as a ...
Systematic Analysis of Pleiotropy in C. elegans Early Embryogenesis
(Public Library of Science, 2008)
Pleiotropy refers to the phenomenon in which a single gene controls several distinct, and seemingly unrelated, phenotypic effects. We use C. elegans early embryogenesis as a model to conduct systematic studies of pleiotropy. ...
Large-Scale Assessment of the Effect of Popularity on the Reliability of Research
(Public Library of Science, 2009)
Based on theoretical reasoning it has been suggested that the reliability of findings published in the scientific literature decreases with the popularity of a research field. Here we provide empirical support for this ...
A Careful Look at Binding Site Reorganization in the even-skipped Enhancers of Drosophila and Sepsids
(Public Library of Science, 2008)
High-Resolution Mutation Mapping Reveals Parallel Experimental Evolution in Yeast
(Public Library of Science, 2006)
Understanding the genetic basis of evolutionary adaptation is limited by our ability to efficiently identify the genomic locations of adaptive mutations. Here we describe a method that can quickly and precisely map the ...
Information Flow Analysis of Interactome Networks
(Public Library of Science, 2009)
Recent studies of cellular networks have revealed modular organizations of genes and proteins. For example, in interactome networks, a module refers to a group of interacting proteins that form molecular complexes and/or ...
The Case for Selection at CCR5-Δ32
(Public Library of Science, 2005)
The C-C chemokine receptor 5, 32 base-pair deletion (CCR5-Δ32) allele confers strong resistance to infection by the AIDS virus HIV. Previous studies have suggested that CCR5-Δ32 arose within the past 1,000 y and rose to ...
Single-Nucleosome Mapping of Histone Modifications in S. cerevisiae
(Public Library of Science, 2005)
Covalent modification of histone proteins plays a role in virtually every process on eukaryotic DNA, from transcription to DNA repair. Many different residues can be covalently modified, and it has been suggested that these ...
Empirical Bayes Analysis of Quantitative Proteomics Experiments
(Public Library of Science, 2009)
Background: Advances in mass spectrometry-based proteomics have enabled the incorporation of proteomic data into systems approaches to biology. However, development of analytical methods has lagged behind. Here we describe ...