Multiplexed Illumina sequencing libraries from picogram quantities of DNA

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Multiplexed Illumina sequencing libraries from picogram quantities of DNA

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Title: Multiplexed Illumina sequencing libraries from picogram quantities of DNA
Author: Bowman, Sarah K; Simon, Matthew D; Deaton, Aimee M; Tolstorukov, Michael; Borowsky, Mark L; Kingston, Robert E

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Citation: Bowman, Sarah K, Matthew D Simon, Aimee M Deaton, Michael Tolstorukov, Mark L Borowsky, and Robert E Kingston. 2013. “Multiplexed Illumina sequencing libraries from picogram quantities of DNA.” BMC Genomics 14 (1): 466. doi:10.1186/1471-2164-14-466. http://dx.doi.org/10.1186/1471-2164-14-466.
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Abstract: Background: High throughput sequencing is frequently used to discover the location of regulatory interactions on chromatin. However, techniques that enrich DNA where regulatory activity takes place, such as chromatin immunoprecipitation (ChIP), often yield less DNA than optimal for sequencing library preparation. Existing protocols for picogram-scale libraries require concomitant fragmentation of DNA, pre-amplification, or long overnight steps. Results: We report a simple and fast library construction method that produces libraries from sub-nanogram quantities of DNA. This protocol yields conventional libraries with barcodes suitable for multiplexed sample analysis on the Illumina platform. We demonstrate the utility of this method by constructing a ChIP-seq library from 100 pg of ChIP DNA that demonstrates equivalent genomic coverage of target regions to a library produced from a larger scale experiment. Conclusions: Application of this method allows whole genome studies from samples where material or yields are limiting.
Published Version: doi:10.1186/1471-2164-14-466
Other Sources: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3711846/pdf/
Terms of Use: This article is made available under the terms and conditions applicable to Other Posted Material, as set forth at http://nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of-use#LAA
Citable link to this page: http://nrs.harvard.edu/urn-3:HUL.InstRepos:11717588
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