Gateways to the FANTOM5 promoter level mammalian expression atlas

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Gateways to the FANTOM5 promoter level mammalian expression atlas

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Title: Gateways to the FANTOM5 promoter level mammalian expression atlas
Author: Lizio, Marina; Harshbarger, Jayson; Shimoji, Hisashi; Severin, Jessica; Kasukawa, Takeya; Sahin, Serkan; Abugessaisa, Imad; Fukuda, Shiro; Hori, Fumi; Ishikawa-Kato, Sachi; Mungall, Christopher J; Arner, Erik; Baillie, J Kenneth; Bertin, Nicolas; Bono, Hidemasa; de Hoon, Michiel; Diehl, Alexander D; Dimont, Emmanuel; Freeman, Tom C; Fujieda, Kaori; Hide, Winston; Kaliyaperumal, Rajaram; Katayama, Toshiaki; Lassmann, Timo; Meehan, Terrence F; Nishikata, Koro; Ono, Hiromasa; Rehli, Michael; Sandelin, Albin; Schultes, Erik A; ‘t Hoen, Peter AC; Tatum, Zuotian; Thompson, Mark; Toyoda, Tetsuro; Wright, Derek W; Daub, Carsten O; Itoh, Masayoshi; Carninci, Piero; Hayashizaki, Yoshihide; Forrest, Alistair RR; Kawaji, Hideya

Note: Order does not necessarily reflect citation order of authors.

Citation: Lizio, M., J. Harshbarger, H. Shimoji, J. Severin, T. Kasukawa, S. Sahin, I. Abugessaisa, et al. 2015. “Gateways to the FANTOM5 promoter level mammalian expression atlas.” Genome Biology 16 (1): 22. doi:10.1186/s13059-014-0560-6.
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Abstract: The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource ( This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas. Electronic supplementary material The online version of this article (doi:10.1186/s13059-014-0560-6) contains supplementary material, which is available to authorized users.
Published Version: doi:10.1186/s13059-014-0560-6
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