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dc.contributor.advisorGiribet, Gonzalo
dc.contributor.authorBaker, Caitlin
dc.date.accessioned2020-10-16T14:02:31Z
dc.date.created2020-05
dc.date.issued2020-05-11
dc.date.submitted2020
dc.identifier.citationBaker, Caitlin. 2020. Phylogenetics and Biogeography of Soil Invertebrates Across Gondwana. Doctoral dissertation, Harvard University, Graduate School of Arts & Sciences.
dc.identifier.urihttps://nrs.harvard.edu/URN-3:HUL.INSTREPOS:37365794*
dc.description.abstractSince the acceptance of plate tectonics, no topic in historical biogeography has attracted so much interest as the breakup of the former Southern Hemisphere supercontinent Gondwana. As it separated, it was thought that widely-distributed low vagility organisms passively rafted apart on the continental fragments – an idea known as Gondwanan vicariance. In this dissertation, I explore the extent to which vicariance explains biogeographic patterns in multiple groups of soil invertebrates. In Chapter 1, I resolve relationships in the mite harvestman family Pettalidae using RNA sequencing and phylogenomic analysis, specifically interrogating the position of an unstable taxon whose position differed in concatenation and coalescence methods. I also infer divergence times and characterize diversification patterns in the family, and find multiple instances of likely Gondwanan vicariance. In Chapter 2, I generate the first molecular phylogeny focused on the armored harvestman family Triaenonychidae using Sanger DNA sequencing and infer divergence times for the group. I similarly find that Triaenonychidae retains signatures of Pangaean and Gondwanan breakup, though I find at least one incidence of trans-oceanic dispersal, to New Caledonia. In Chapter 3, I reconstruct the evolutionary and biogeographic history of the phylum Onychophora (velvet worms) using transcriptomic analyses and divergence dating. In the temperate family Peripatopsidae, I again find signatures of Gondwanan vicariance. In the tropical family Peripatidae, though, I infer multiple instances of over-water dispersal, and hypothesize that their unique reproductive mode of placentotrophic viviparity could have enabled their colonization of oceanic islands in the Caribbean. Finally, Chapter 4 narrows in scope to focus on a clade of triaenonychid harvestmen from New Zealand, the sister genera Karamea and Sorensenella. Using ultraconserved element sequencing, I reconstruct phylogenetic relationships, delimit species using traditional genetic and unsupervised machine learning approaches, characterize genetic diversity of the different species, and infer divergence times. My results support the existence of multiple species, many of which are undescribed and one of which is likely parthenogenetic, and find that the group retains signatures of multiple geologic and climatic events in New Zealand’s history, such as the Oligocene marine transgression.
dc.description.sponsorshipBiology, Organismic and Evolutionary
dc.format.mimetypeapplication/pdf
dc.language.isoen
dash.licenseLAA
dc.subjectOpiliones
dc.subjectOnychophora
dc.subjectvicariance
dc.subjectphylogenomics
dc.subjectsystematics
dc.titlePhylogenetics and Biogeography of Soil Invertebrates Across Gondwana
dc.typeThesis or Dissertation
dash.depositing.authorBaker, Caitlin
dc.date.available2020-10-16T14:02:31Z
thesis.degree.date2020
thesis.degree.grantorGraduate School of Arts & Sciences
thesis.degree.grantorGraduate School of Arts & Sciences
thesis.degree.levelDoctoral
thesis.degree.levelDoctoral
thesis.degree.nameDoctor of Philosophy
thesis.degree.nameDoctor of Philosophy
dc.contributor.committeeMemberDavis, Charles C.
dc.contributor.committeeMemberFarrell, Brian D.
dc.contributor.committeeMemberHopkins, Robin
dc.type.materialtext
thesis.degree.departmentBiology, Organismic and Evolutionary
thesis.degree.departmentBiology, Organismic and Evolutionary
dash.identifier.vireo
dc.identifier.orcid0000-0002-9782-4959
dash.author.emailbaker.caitlin@gmail.com


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