Now showing items 1-20 of 27

    • Advances in understanding cartilage remodeling 

      Li, Yefu; Xu, Lin (F1000Research, 2015)
      Cartilage remodeling is currently among the most popular topics in osteoarthritis research. Remodeling includes removal of the existing cartilage and replacement by neo-cartilage. As a loss of balance between removal and ...
    • Alterations in Energy/Redox Metabolism Induced by Mitochondrial and Environmental Toxins: A Specific Role for Glucose-6-Phosphate-Dehydrogenase and the Pentose Phosphate Pathway in Paraquat Toxicity 

      Lei, Shulei; Zavala-Flores, Laura; Garcia-Garcia, Aracely; Nandakumar, Renu; Huang, Yuting; Madayiputhiya, Nandakumar; Stanton, Robert C.; Dodds, Eric D.; Powers, Robert; Franco, Rodrigo (American Chemical Society, 2014)
      Parkinson’s disease (PD) is a multifactorial disorder with a complex etiology including genetic risk factors, environmental exposures, and aging. While energy failure and oxidative stress have largely been associated with ...
    • Assessment of pharmacogenomic agreement 

      Safikhani, Zhaleh; El-Hachem, Nehme; Quevedo, Rene; Smirnov, Petr; Goldenberg, Anna; Juul Birkbak, Nicolai; Mason, Christopher; Hatzis, Christos; Shi, Leming; Aerts, Hugo JWL; Quackenbush, John; Haibe-Kains, Benjamin (F1000Research, 2016)
      In 2013 we published an analysis demonstrating that drug response data and gene-drug associations reported in two independent large-scale pharmacogenomic screens, Genomics of Drug Sensitivity in Cancer (GDSC) and Cancer ...
    • The Bioconductor channel in F1000Research 

      Huber, Wolfgang; Carey, Vincent; Davis, Sean; Hansen, Kasper Daniel; Morgan, Martin (F1000Research, 2015)
      Bioconductor ( bioconductor.org) is a rich source of software and know-how for the integrative analysis of genomic data. The Bioconductor channel in F1000Research provides a forum for task-oriented workflows that each cover ...
    • Biology and structure of leukocyte β 2 integrins and their role in inflammation 

      Arnaout, M. Amin (F1000Research, 2016)
      Integrins comprise a large family of αβ heterodimeric cell adhesion receptors that are expressed on all cells except red blood cells and that play essential roles in the regulation of cell growth and function. The leukocyte ...
    • Characterization of DDR2 Inhibitors for the Treatment of DDR2 Mutated Nonsmall Cell Lung Cancer 

      Terai, Hideki; Tan, Li; Beauchamp, Ellen M.; Hatcher, John M.; Liu, Qingsong; Meyerson, Matthew; Gray, Nathanael S.; Hammerman, Peter S. (American Chemical Society, 2015)
      Despite advances in precision medicine approaches over the past decade, the majority of nonsmall cell lung cancers (NSCLCs) are refractory to treatment with targeted small molecule inhibitors. Previous work has identified ...
    • Clinical applications of microRNAs 

      Hydbring, Per; Badalian-Very, Gayane (F1000Research, 2013)
      MicroRNAs represent a class of small RNAs derived from polymerase II controlled transcriptional regions. The primary transcript forms one or several bulging double stranded hairpins which are processed by Drosha and Dicer ...
    • A close call: does the location of incision at cesarean delivery matter in patients with vasa previa? A case report. 

      Neuhausser, Werner M; Baxi, Laxmi V (F1000Research, 2013)
      We present here a case of vasa previa in a multipara, diagnosed at the time of her late second trimester ultrasonogram. The patient subsequently underwent an elective cesarean section after 37 weeks gestation, giving birth ...
    • Comparison of arterial and venous blood biomarker levels in chronic obstructive pulmonary disease 

      Kelly, Emer; Owen, Caroline A; Abraham, Amadeus; Knowlton, David L; Celli, Bartolome R; Pinto-Plata, Victor (F1000Research, 2013)
      Purpose: The development of novel biomarkers is an unmet need in chronic obstructive pulmonary disease (COPD). Arterial blood comes directly from the lung and venous blood drains capillary beds of the organ or tissue ...
    • Complex mechanisms linking neurocognitive dysfunction to insulin resistance and other metabolic dysfunction 

      Stoeckel, Luke E.; Arvanitakis, Zoe; Gandy, Sam; Small, Dana; Kahn, C. Ronald; Pascual-Leone, Alvaro; Pawlyk, Aaron; Sherwin, Robert; Smith, Philip (F1000Research, 2016)
      Scientific evidence has established several links between metabolic and neurocognitive dysfunction, and epidemiologic evidence has revealed an increased risk of Alzheimer’s disease and vascular dementia in patients with ...
    • Defining the functional states of Th17 cells 

      Lee, Youjin; Kuchroo, Vijay (F1000Research, 2015)
      The molecular mechanisms governing T helper (Th) cell differentiation and function have revealed a complex network of transcriptional and protein regulators. Cytokines not only initiate the differentiation of CD4 Th cells ...
    • DFG-out Mode of Inhibition by an Irreversible Type-1 Inhibitor Capable of Overcoming Gate-Keeper Mutations in FGF Receptors 

      Huang, Zhifeng; Li, Xiaokun; Tan, Li; Wang, Huiyan; Liu, Yang; Blais, Steven; Deng, Jingjing; Neubert, Thomas A.; Gray, Nathanael S.; Mohammadi, Moosa (American Chemical Society, 2014)
      Drug-resistance acquisition through kinase gate-keeper mutations is a major hurdle in the clinic. Here, we determined the first crystal structures of the human FGFR4 kinase domain (FGFR4K) alone and complexed with ponatinib, ...
    • HDAC6 Inhibitors Modulate Lys49 Acetylation and Membrane Localization of β-Catenin in Human iPSC-Derived Neuronal Cells 

      Iaconelli, Jonathan; Huang, Joanne H.; Berkovitch, Shaunna S.; Chattopadhyay, Shrikanta; Mazitschek, Ralph; Schreiber, Stuart L.; Haggarty, Stephen J.; Karmacharya, Rakesh (American Chemical Society, 2014)
      We examined the effects of isoform-specific histone deacetylase (HDAC) inhibitors on β-catenin posttranslational modifications in neural progenitor cells (NPCs) derived from human induced pluripotent stem cells (iPSCs). ...
    • High Loading of Polygenic Risk for ADHD in Children With Comorbid Aggression 

      Hamshere, Marian L.; Langley, Kate; Martin, Joanna; Agha, Sharifah Shameem; Stergiakouli, Evangelia; Anney, Richard J.L.; Buitelaar, Jan; Faraone, Stephen V.; Lesch, Klaus-Peter; Neale, Benjamin M.; Franke, Barbara; Sonuga-Barke, Edmund; Asherson, Philip; Merwood, Andrew; Kuntsi, Jonna; Medland, Sarah E.; Ripke, Stephan; Steinhausen, Hans-Christoph; Freitag, Christine; Reif, Andreas; Renner, Tobias J.; Romanos, Marcel; Romanos, Jasmin; Warnke, Andreas; Meyer, Jobst; Palmason, Haukur; Vasquez, Alejandro Arias; Lambregts-Rommelse, Nanda; Roeyers, Herbert; Biederman, Joseph; Doyle, Alysa E.; Hakonarson, Hakon; Rothenberger, Aribert; Banaschewski, Tobias; Oades, Robert D.; McGough, James J.; Kent, Lindsey; Williams, Nigel; Owen, Michael J.; Holmans, Peter; O’Donovan, Michael C.; Thapar, Anita (American Psychiatric Association, 2014)
      Objective: Although attention deficit hyperactivity disorder (ADHD) is highly heritable, genome-wide association studies (GWAS) have not yet identified any common genetic variants that contribute to risk. There is evidence ...
    • Identification of a Small Molecule that Increases Hemoglobin Oxygen Affinity and Reduces SS Erythrocyte Sickling 

      Nakagawa, Akito; Lui, Francine E.; Wassaf, Dina; Yefidoff-Freedman, Revital; Casalena, Dominick; Palmer, Michelle A.; Meadows, Jacqueline; Mozzarelli, Andrea; Ronda, Luca; Abdulmalik, Osheiza; Bloch, Kenneth D.; Safo, Martin K.; Zapol, Warren M. (American Chemical Society, 2014)
      Small molecules that increase the oxygen affinity of human hemoglobin may reduce sickling of red blood cells in patients with sickle cell disease. We screened 38 700 compounds using small molecule microarrays and identified ...
    • Identification of Inhibitors of PvdQ, an Enzyme Involved in the Synthesis of the Siderophore Pyoverdine 

      Wurst, Jacqueline M.; Drake, Eric J.; Theriault, Jimmy R.; Jewett, Ivan T.; VerPlank, Lynn; Perez, Jose R.; Dandapani, Sivaraman; Palmer, Michelle; Moskowitz, Samuel M.; Schreiber, Stuart L.; Munoz, Benito; Gulick, Andrew M. (American Chemical Society, 2014)
      Pseudomonas aeruginosa produces the peptide siderophore pyoverdine, which is used to acquire essential Fe3+ ions from the environment. PvdQ, an Ntn hydrolase, is required for the biosynthesis of pyoverdine. PvdQ knockout ...
    • Inositol Phosphate Recycling Regulates Glycolytic and Lipid Metabolism That Drives Cancer Aggressiveness 

      Benjamin, Daniel I.; Louie, Sharon M.; Mulvihill, Melinda M.; Kohnz, Rebecca A.; Li, Daniel S.; Chan, Lauryn G.; Sorrentino, Antonio; Bandyopadhyay, Sourav; Cozzo, Alyssa; Ohiri, Anayo; Goga, Andrei; Ng, Shu-Wing; Nomura, Daniel K. (American Chemical Society, 2014)
      Cancer cells possess fundamentally altered metabolism that supports their pathogenic features, which includes a heightened reliance on aerobic glycolysis to provide precursors for synthesis of biomass. We show here that ...
    • Nutrition in critical illness: a current conundrum 

      Hoffer, L. John; Bistrian, Bruce R. (F1000Research, 2016)
      Critically ill people are unable to eat. What’s the best way to feed them? Nutrition authorities have long recommended providing generous amounts of protein and calories to critically ill patients, either intravenously or ...
    • Perioperative sleep apnea: a real problem or did we invent a new disease? 

      Zaremba, Sebastian; Mojica, James E.; Eikermann, Matthias (F1000Research, 2016)
      Depending on the subpopulation, obstructive sleep apnea (OSA) can affect more than 75% of surgical patients. An increasing body of evidence supports the association between OSA and perioperative complications, but some ...
    • Recent advances in understanding and treating ARDS 

      Baron, Rebecca M.; Levy, Bruce D. (F1000Research, 2016)
      Acute respiratory distress syndrome represents a complex syndrome with considerable morbidity and mortality, for which there exist no targeted treatment strategies. However, recent advances in clinical care have improved ...