Browsing HMS Scholarly Articles by Harvard-affiliated Author "Quackenbush, John"

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Browsing HMS Scholarly Articles by Harvard-affiliated Author "Quackenbush, John"

Now showing items 1-14 of 14

Analyzing networks of phenotypes in complex diseases: methodology and applications in COPD

Chu, Jen-hwa; Hersh, Craig P; Castaldi, Peter J; Cho, Michael H; Raby, Benjamin A; Laird, Nan; Bowler, Russell et al. (BMC Systems Biology, 2014) Link to Published Version
Angiogenic mRNA and microRNA Gene Expression Signature Predicts a Novel Subtype of Serous Ovarian Cancer

Risch, Thomas; Fan, Jian-Bing; Holton, Kristina; Rubio, Renee; April, Craig; Wickham-Garcia, Eliza; Bentink, Stefan et al. (PLoS ONE, 2012) Link to Published Version
CRX is a Diagnostic Marker of Retinal and Pineal Lineage Tumors

Idbaih, Ahmed; Geffers, Lars; Correll, Mick; Holton, Kristina; Santagata, Sandro; Maire, Cecile; Quackenbush, John et al. (PLoS ONE, 2009) Link to Published Version
Exploratory Study to Identify Radiomics Classifiers for Lung Cancer Histology

Wu, Weimiao; Parmar, Chintan; Grossmann, Patrick; Quackenbush, John; Lambin, Philippe; Bussink, Johan; Mak, Raymond et al. (Frontiers in Oncology, 2016) Link to Published Version
Haploinsufficiency of Hedgehog interacting protein causes increased emphysema induced by cigarette smoke through network rewiring

Lao, Taotao; Glass, Kimberly; Qiu, Weiliang; Polverino, Francesca; Gupta, Kushagra; Morrow, Jarrett; Mancini, John Dominic et al. (Genome Medicine, 2015) Link to Published Version
Integrated Analysis of Multiple Microarray Datasets Identifies a Reproducible Survival Predictor in Ovarian Cancer

Konstantinopoulos, Panagiotis; Cannistra, Stephen Anthony; Fountzilas, Helen; Culhane, Aedin; Pillay, Kamana; Rueda, Bo Ruben; Cramer, Daniel William et al. (PLoS ONE, 2011) Link to Published Version
Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators

Padi, Megha; Quackenbush, John (BMC Systems Biology, 2015) Link to Published Version
Interpreting Cancer Genomes Using Systematic Host Perturbations by Tumour Virus Proteins

Rozenblatt-Rosen, Orit; Deo, Rahul C.; Dricot, Amélie; Askenazi, Manor; Tavares, Maria; Abderazzaq, Fieda; Byrdsong, Danielle et al. (Nature, 2012) Link to Published Version
A microRNA activity map of human mesenchymal tumors: connections to oncogenic pathways; an integrative transcriptomic study

Fountzilas, Elena; Kelly, Andrew D; Francoeur, Nancy; Correll, Mick; Rubio, Renee; Hu, Lan; Perez-Atayde, Antonio Rafael et al. (BMC Genomics, 2012) Link to Published Version
Mitochondrial iron chelation ameliorates cigarette-smoke induced bronchitis and emphysema in mice

Cloonan, Suzanne M.; Glass, Kimberly; Laucho-Contreras, Maria E.; Bhashyam, Abhiram R.; Cervo, Morgan; Pabón, Maria A.; Konrad, Csaba et al. (Nature medicine, 2015) Link to Published Version
A network model for angiogenesis in ovarian cancer

Glass, Kimberly; Quackenbush, John; Spentzos, Dimitrios; Haibe-Kains, Benjamin; Yuan, Guo-Cheng (BMC Bioinformatics, 2015) Link to Published Version
Sexually-dimorphic targeting of functionally-related genes in COPD

Glass, Kimberly; Quackenbush, John; Silverman, Edwin K; Celli, Bartolome; Rennard, Stephen I; Yuan, Guo-Cheng; DeMeo, Dawn L (BMC Systems Biology, 2014) Link to Published Version
Therapeutic Implications of GIPC1 Silencing in Cancer

Chittenden, Thomas W.; Pak, Jane; Rubio, Renee; Holton, Kristina; Prendergast, Niall; Glinskii, Vladimir; Schwede, Mathew et al. (PLoS ONE, 2010) Link to Published Version
Viral Perturbations of Host Networks Reflect Disease Etiology

Gulbahce, Natali; Dricot, Amélie; Byrdsong, Danielle; Franchi, Rachel; Lee, Deok-Sun; Rozenblatt-Rosen, Orit; Mar, Jessica C. et al. (PLoS Computational Biology, 2012) Link to Published Version

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