Browsing HMS Scholarly Articles by Harvard-affiliated Author "Xavier, Ramnik"

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Browsing HMS Scholarly Articles by Harvard-affiliated Author

Browsing HMS Scholarly Articles by Harvard-affiliated Author "Xavier, Ramnik"

Now showing items 1-20 of 32

Autophagy Controls BCG-Induced Trained Immunity and the Response to Intravesical BCG Therapy for Bladder Cancer

Buffen, Kathrin; Oosting, Marije; Quintin, Jessica; Ng, Aylwin; Kleinnijenhuis, Johanneke; Kumar, Vinod; van de Vosse, Esther et al. (PLoS Pathogens, 2014) Link to Published Version
Bacterial and Host Determinants of MAL Activation upon EPEC Infection: The Roles of Tir, ABRA, and FLRT3

Leong, John M.; Machesky, Laura M.; Heath, Robert John William; Xavier, Ramnik; Visegrády, Balázs (PLoS Pathogens, 2011) Link to Published Version
Complex host genetics influence the microbiome in inflammatory bowel disease

Knights, Dan; Silverberg, Mark S; Weersma, Rinse K; Gevers, Dirk; Dijkstra, Gerard; Huang, Hailiang; Tyler, Andrea D et al. (Genome Medicine, 2014) Link to Published Version
ConStrains identifies microbial strains in metagenomic datasets

Luo, Chengwei; Knight, Rob; Siljander, Heli; Knip, Mikael; Xavier, Ramnik J; Gevers, Dirk (Nature biotechnology, 2015) Link to Published Version
Control and Manipulation of Pathogens with an Optical Trap for Live Cell Imaging of Intercellular Interactions

Castro, Carlos E.; Cardenas, Michael L.; Lang, Matthew J.; Tam, Jenny M.; Heath, Robert John William; Xavier, Ramnik; Vyas, Jatin Mahesh (PLoS ONE, 2010) Link to Published Version
Deep Resequencing of GWAS Loci Identifies Rare Variants in CARD9, IL23R and RNF186 That Are Associated with Ulcerative Colitis

Beaudoin, Mélissa; Goyette, Philippe; Boucher, Gabrielle; Lo, Ken Sin; Rivas, Manuel A.; Stevens, Christine; Alikashani, Azadeh et al. (PLoS Genetics, 2013) Link to Published Version
Discovery of a Small-Molecule Probe for V-ATPase Function

Aldrich, Leslie N.; Kuo, Szu-Yu; Castoreno, Adam B.; Goel, Gautam; Kuballa, Petric; Rees, Matthew G.; Seashore-Ludlow, Brinton A. et al. (Journal of the American Chemical Society, 2015) Link to Published Version
Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease

Shaw, Kelly A.; Bertha, Madeline; Hofmekler, Tatyana; Chopra, Pankaj; Vatanen, Tommi; Srivatsa, Abhiram; Prince, Jarod et al. (Genome Medicine, 2016) Link to Published Version
Dysfunction of the Intestinal Microbiome in Inflammatory Bowel Disease and Treatment

Morgan, Xochitl C; Sokol, Harry; Gevers, Dirk; Ward, Doyle V; LeLeiko, Neal; Sands, Bruce E; Tickle, Timothy L. et al. (Genome Biology, 2012) Link to Published Version
Early life environment and natural history of inflammatory bowel diseases

Guo, Abra Y; Stevens, Betsy W; Wilson, Robin G; Russell, Caitlin N; Cohen, Melissa A; Sturgeon, Holly C; Thornton, Anna et al. (BMC Gastroenterology, 2014) Link to Published Version
Functional CRISPR screening identifies the ufmylation pathway as a regulator of SQSTM1/p62

DeJesus, Rowena; Moretti, Francesca; McAllister, Gregory; Wang, Zuncai; Bergman, Phil; Liu, Shanming; Frias, Elizabeth et al. (eLife, 2016) Link to Published Version
Functional genomics identifies negative regulatory nodes controlling phagocyte oxidative burst

Graham, Daniel B.; Becker, Christine E.; Doan, Aivi; Goel, Gautam; Villablanca, Eduardo J.; Knights, Dan; Mok, Amanda et al. (Nature Communications, 2015) Link to Published Version
Functional profiling of the gut microbiome in disease-associated inflammation

Börnigen, Daniela; Morgan, Xochitl C; Franzosa, Eric A; Ren, Boyu; Xavier, Ramnik J; Garrett, Wendy S; Huttenhower, Curtis (Genome Medicine, 2013) Link to Published Version
The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids

Fu, Jingyuan; Bonder, Marc Jan; Cenit, María Carmen; Tigchelaar, Ettje F.; Maatman, Astrid; Dekens, Jackie A.M.; Brandsma, Eelke et al. (Circulation Research, 2015) Link to Published Version
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease

Jostins, Luke; Ripke, Stephan; Weersma, Rinse K; Duerr, Richard H; McGovern, Dermot P; Hui, Ken Y; Lee, James C et al. (Nature, 2012) Link to Published Version
Human Genome-Wide RNAi Screen Identifies an Essential Role for Inositol Pyrophosphates in Type-I Interferon Response

Pulloor, Niyas Kudukkil; Nair, Sajith; Kostic, Aleksandar D.; Bist, Pradeep; Weaver, Jeremy D.; Riley, Andrew M.; Tyagi, Richa et al. (PLoS Pathogens, 2014) Link to Published Version
An Image-Based Genetic Assay Identifies Genes in T1D Susceptibility Loci Controlling Cellular Antiviral Immunity in Mouse

Liao, Juan; Jijon, Humberto B.; Kim, Ira R.; Goel, Gautam; Doan, Aivi; Sokol, Harry; Bauer, Hermann et al. (PLoS ONE, 2014) Link to Published Version
Impaired Autophagy of an Intracellular Pathogen Induced by a Crohn's Disease Associated ATG16L1 Variant

Rioux, John D.; Gay, Nick; Kuballa, Petric; Huett, Alan Stephen; Daly, Mark Joseph; Xavier, Ramnik (PLoS ONE, 2008) Link to Published Version
The kinase DYRK1A reciprocally regulates the differentiation of Th17 and regulatory T cells

Khor, Bernard; Gagnon, John D; Goel, Gautam; Roche, Marly I; Conway, Kara L; Tran, Khoa; Aldrich, Leslie N et al. (eLife, 2015) Link to Published Version
Metagenomic Characterization of Microbial Communities In Situ Within the Deeper Layers of the Ileum in Crohn’s Disease

Pedamallu, Chandra Sekhar; Bhatt, Ami S.; Bullman, Susan; Fowler, Sharyle; Freeman, Samuel S.; Durand, Jacqueline; Jung, Joonil et al. (Cellular and Molecular Gastroenterology and Hepatology, 2016) Link to Published Version

Now showing items 1-20 of 32

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