rtracklayer: an R package for interfacing with genome browsers
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CitationLawrence, Michael, Robert Gentleman, and Vincent Carey. 2009. rtracklayer: an R package for interfacing with genome browsers. Bioinformatics 25(14): 1841-1842.
AbstractSummary: The rtracklayer package supports the integration of existing genome browsers with experimental data analyses performed in R. The user may (i) transfer annotation tracks to and from a genome browser and (ii) create and manipulate browser views to focus on a particular set of annotations in a specific genomic region. Currently, the UCSC genome browser is supported. Availability: The package is freely available from http://www.bioconductor.org/. A quick-start vignette is included with the package. Contact: firstname.lastname@example.org
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