# Comprehensive Volumetric Confocal Microscopy with Adaptive Focusing

 Title: Comprehensive Volumetric Confocal Microscopy with Adaptive Focusing Author: Jillella, Priyanka; Kang, DongKyun; Yoo, Hongki; Bouma, Brett; Tearney, Guillermo James Note: Order does not necessarily reflect citation order of authors. Citation: Kang, DongKyun, Hongki Yoo, Priyanka Jillella, Brett E. Bouma, and Guillermo J. Tearney. 2011. Comprehensive volumetric confocal microscopy with adaptive focusing. Biomedical Optics Express 2(6): 1412-1422. Full Text & Related Files: 3114210.pdf (1.555Mb; PDF) Abstract: Comprehensive microscopy of distal esophagus could greatly improve the screening and surveillance of esophageal diseases such as Barrett’s esophagus by providing histomorphologic information over the entire region at risk. Spectrally encoded confocal microscopy (SECM) is a high-speed reflectance confocal microscopy technology that can be configured to image the entire distal esophagus by helically scanning the beam using optics within a balloon-centering probe. It is challenging to image the human esophagus in vivo with balloon-based SECM, however, because patient motion and anatomic tissue surface irregularities decenter the optics, making it difficult to keep the focus at a predetermined location within the tissue as the beam is scanned. In this paper, we present a SECM probe equipped with an adaptive focusing mechanism that can compensate for tissue surface irregularity and dynamic focal variation. A tilted arrangement of the objective lens is employed in the SECM probe to provide feedback signals to an adaptive focusing mechanism. The tilted configuration also allows the probe to obtain reflectance confocal data from multiple depth levels, enabling the acquisition of three-dimensional volumetric data during a single scan of the probe. A tissue phantom with a surface area of $$12.6 cm^2$$ was imaged using the new SECM probe, and 8 large-area reflectance confocal microscopy images were acquired over the depth range of $$56 \mu m$$ in 20 minutes. Large-area SECM images of excised swine small intestine tissue were also acquired, enabling the visualization of villous architecture, epithelium, and lamina propria. The adaptive focusing mechanism was demonstrated to enable acquisition of in-focus images even when the probe was not centered and the tissue surface was irregular. Published Version: doi:10.1364/BOE.2.001412 Other Sources: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3114210/pdf/ Terms of Use: This article is made available under the terms and conditions applicable to Other Posted Material, as set forth at http://nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of-use#LAA Citable link to this page: http://nrs.harvard.edu/urn-3:HUL.InstRepos:8462360 Downloads of this work: