Menon, RajasreeDeutsch, Eric WPitteri, Sharon JFaca, Vitor MNewcomb, Lisa FBardeesy, NabeelHung, Kenneth EJacks, TylerPoliti, KaterinaAebersold, RuediOmenn, Gilbert SStates, David JHanash, Samir MZhang, QingWang, HongDePinho, Ronald A.Dinulescu, DanielaKucherlapati, Raju2011-04-192008Zhang, Qing, Rajasree Menon, Eric W. Deutsch, Sharon J. Pitteri, Vitor M. Faca, Hong Wang, Lisa F. Newcomb, et al. 2008. A mouse plasma peptide atlas as a resource for disease proteomics. Genome Biology 9(6): R93.1465-6906http://nrs.harvard.edu/urn-3:HUL.InstRepos:4866217We present an in-depth analysis of mouse plasma leading to the development of a publicly available repository composed of 568 liquid chromatography-tandem mass spectrometry runs. A total of 13,779 distinct peptides have been identified with high confidence. The corresponding approximately 3,000 proteins are estimated to span a 7 logarithmic range of abundance in plasma. A major finding from this study is the identification of novel isoforms and transcript variants not previously predicted from genome analysis.en-USJournal Article2011-04-1910.1186/gb-2008-9-6-r93