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Matthews, Beverley

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Beverley

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Matthews, Beverley

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Author's Publications: search.filters.isAuthorOfPublication.55ebff0f-a505-4bda-ae50-c553354daf07End date: 2002

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    Apollo: A Sequence Annotation Editor

    (BioMed Central, 2002) Lewis, SE; Searle, SMJ; Iyer, V; Wiel, C; Bayraktaroglu, L; Birney, E; Kaminker, JS; Prochnik, SE; Smith, CD; Tupy, JL; Rubin, GM; Mungall, CJ; Clamp, ME; Harris, N; Gibson, M; Richter, J; Crosby, Madeline; Matthews, Beverley; Misra, S

    The well-established inaccuracy of purely computational methods for annotating genome sequences necessitates an interactive tool to allow biological experts to refine these approximations by viewing and independently evaluating the data supporting each annotation. Apollo was developed to meet this need, enabling curators to inspect genome annotations closely and edit them. FlyBase biologists successfully used Apollo to annotate the Drosophila melanogaster genome and it is increasingly being used as a starting point for the development of customized annotation editing tools for other genome projects.

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    Annotation of the Drosophila Melanogaster Euchromatic Genome: A Systematic Review

    (BioMed Central, 2002) Misra, Sima; Mungall, Christopher J; Campbell, Kathryn S; Hradecky, Pavel; Huang, Yanmei; Kaminker, Joshua S; Millburn, Gillian H; Prochnik, Simon E; Tupy, Jonathan L; Whitfield, Eleanor J; Bayraktaroglu, Leyla; Bettencourt, Brian R; Celniker, Susan E; de Grey, Aubrey DNJ; Drysdale, Rachel A; Harris, Nomi L; Richter, John; Shu, ShengQiang; Stapleton, Mark; Yamada, Chihiro; Ashburner, Michael; Rubin, Gerald M; Lewis, Suzanna E; Crosby, Madeline; Matthews, Beverley; Smith, Christopher D; Berman, Benjamin P; Russo, Susan; Schroeder, Andrew; Gelbart, William Martin

    The recent completion of the Drosophila melanogaster genomic sequence to high quality, and the availability of a greatly expanded set of Drosophila cDNA sequences, afforded FlyBase the opportunity to significantly improve genomic annotations.