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Davis, Charles

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Davis

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Charles

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Davis, Charles

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Now showing 1 - 3 of 3
  • Publication

    Phylogeny and Biogeography of Taxus (Taxaceae) Inferred from Sequences of the Internal Transcribed Spacer Region of Nuclear Ribosomal DNA

    (Harvard University Herbaria, 2001) Li, Jianhua; Davis, Charles; Tredici, Peter Del; Donoghue, Michael J.

    Species of Taxus, particularly Taxus baccata, have long been cultivated as ornamentals in Europe and North America. Ten species of Taxus are generally recognized, but phylogenetic relationships among these species remain unclear. We used sequences of the nuclear ribosomal DNA ITS region to infer phylogenetic relationships. Three of the four New World species form a well-supported clade, within which the Pacific coastal species. T. brevifolia is sister to a clade containing T. floridana and T. globosa of northwestern Florida and northern Mexico, respectively. Taxus canadensis, which is more widely distributed in eastern North America, appears to be more closely related to Old World taxa than to other New World species. This relationship, though weakly supported in our analysis, is consistent with leaf anatomical features. Taxus chinensis and T. mairei of southeast Asia form a clade, which is sister to a clade containing T. cuspidata of Japan and northeastern China, and T. baccata of Europe and North Africa. Our ITS phylogeny implies that intercontinental disjunctions in Taxus entailed at least two vicariance events: an initial split between the New World T. floridana-T. brevifolia-T. globosa clade and the rest, and a later split separating T. canadensis from the Old World species.

  • Publication

    Phylogenetic Relationships of Torreya (Taxaceae) Inferred from Sequences of Nuclear Ribosomal DNA ITS Region

    (Harvard University Herbaria, 2001) Li, Jianhua; Davis, Charles; Donoghue, Michael J.; Kelley, Susan; Del Tredici, Peter

    Torreya, composed of five to seven species, is distributed disjunctly in easten Asia and the eastern and western United States. In this study, interspecific relationships of Torreya were examined on the basis of sequences of the nrDNA ITS region. Torreya taxifolia and T. californica of the New World form a clade, as do the Old World species. This result suggests that the previous division of Torreya into two sections does not reflect phylogenetic relationships and that the diagnostic character for the two sections, namely rumination of albumen, is homoplastic. It is possible that the present distribution of species of Torreya resulted from a single vicariance event separating the Old World and New World. However, the modern species are apparently young in age, and it will be necessary to integrate older fossils to ascertain the deeper biogeographic history of the genus.

  • Publication

    Phylogeny of Malpighiaceae: Evidence from Chloroplast NDHF and TRNL-F Nucleotide Sequences

    (Botanical Society Of America, 2001) Davis, Charles; Anderson, William R.; Donoghue, Michael J.

    The Malpighiaceae are a family of similar to ~1250 species of predominantly New World tropical flowering plants. Infrafamilial classification has long been based on fruit characters. Phylogenetic analyses of chloroplast DNA nucleotide sequences were analyzed to help resolve the phylogeny of Malpighiaceae. A total of 79 species. representing 58 of the 65 currently recognized genera. were studied. The 3' region of the gene ndhF was sequenced for 77 species and the noncoding intergenic spacer region trnL-F was sequenced for 65 species' both sequences were obtained for the outgroup, Humiria (Humiriaceae), Phylogenetic relationships inferred from these data,ets are largely congruent with one another and with results from combined analyses. The family is divided into two major clades, recognized here as the subfamilies Byrsonimoideae (New World only) and Malpighioideae (New World and Old World). Niedenzu's tribes are all polyphyletic, suggesting extensive convergence on similar fruit types; only de Jussieu's tribe Gaudichaudieae and Anderson's tribes Acmanthereae and Galphimieae are monophyletic. Fleshy fruits evolved three times in the family and bristly fruits at least three times. Among the wing-fruited vines, which constitute more than half the diversity in the family, genera with dorsal-winged samaras are fairly well resolved, while the resolution of taxa with lateral-winged samaras is poor. The trees suggest a shift from radially symmetrical pollen arrangement to globally symmetrical pollen at the base of one of the clades within the Malpighioideae. The Old World taxa fall into at least six and as many as nine clades.