Publication: UpSetR: an R package for the visualization of intersecting sets and their properties
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Date
2017
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Oxford University Press
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Conway, Jake R., Alexander Lex, and Nils Gehlenborg. 2017. “UpSetR: an R package for the visualization of intersecting sets and their properties.” Bioinformatics 33 (18): 2938-2940. doi:10.1093/bioinformatics/btx364. http://dx.doi.org/10.1093/bioinformatics/btx364.
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Abstract
Abstract Motivation: Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed. Results: We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, their size, and other properties. Availability and implementation: UpSetR is available at https://github.com/hms-dbmi/UpSetR/ and released under the MIT License. A Shiny app is available at https://gehlenborglab.shinyapps.io/upsetr/. Contact: nils@hms.harvard.edu Supplementary information: Supplementary data are available at Bioinformatics online.
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Genome Analysis
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