Now showing items 3233-3252 of 17922

    • Computational Prediction of Transcription-Factor Binding Site Locations 

      Bulyk, Martha Leonia (BioMed Central, 2003)
      Identifying genomic locations of transcription-factor binding sites, particularly in higher eukaryotic genomes, has been an enormous challenge. Various experimental and computational approaches have been used to detect ...
    • Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer 

      Börnigen, Daniela; Tyekucheva, Svitlana; Wang, Xiaodong; Rider, Jennifer R.; Lee, Gwo-Shu; Mucci, Lorelei A.; Sweeney, Christopher; Huttenhower, Curtis (Public Library of Science, 2016)
      Molecular research in cancer is one of the largest areas of bioinformatic investigation, but it remains a challenge to understand biomolecular mechanisms in cancer-related pathways from high-throughput genomic data. This ...
    • A Computational Screen for Regulators of Oxidative Phosphorylation Implicates SLIRP in Mitochondrial RNA Homeostasis 

      Baughman, Joshua M.; Nilsson, Roland; Gohil, Vishal; Arlow, Daniel H.; Gauhar, Zareen; Mootha, Vamsi Krishna (Public Library of Science, 2009)
      The human oxidative phosphorylation (OxPhos) system consists of approximately 90 proteins encoded by nuclear and mitochondrial genomes and serves as the primary cellular pathway for ATP biosynthesis. While the core protein ...
    • Computationally designed antibody–drug conjugates self-assembled via affinity ligands 

      Gupta, Nimish; Ansari, Aasif; Dhoke, Gaurao V.; Chilamari, Maheshwerreddy; Sivaccumar, Jwala; Kumari, Smita; Chatterjee, Snigdha; Goyal, Ravinder; Dutta, Pradip Kumar; Samarla, Mallik; Mukherjee, Madhumita; Sarkar, Arindam; Mandal, Swadhin K.; Rai, Vishal; Biswas, Goutam; Sengupta, Aniruddha; Roy, Sudip; Roy, Monideepa; Sengupta, Shiladitya (Springer Science and Business Media LLC, 2019-11-04)
      Antibody–drug conjugates (ADCs) combine the high specificity of antibodies with cytotoxic payloads. However, current strategies for the synthesis of ADCs either yield unstable or heterogeneous products or involve complex ...
    • Computationally Guided High-Throughput Design of Self-Assembling Drug Nanoparticles 

      Reker, Daniel; Rybakova, Yulia; Kirtane, Ameya; Cao, Ruonan; Yang, Jee Won; Navamajiti, Natsuda; Gardner, Apolonia; Zhang, Rosanna; Esfandiary, Tina; L'Heureux, Johanna; von Erlach, Thomas; Smekalova, Elena M.; Leboeuf, Dominique; Hess, Kaitlyn; Lopes, Aaron; Rogner, Jaimie; Collins, Joy; Tamang, Siddartha; Ishida, Keiko; Chamberlain, Paul; Yun, Dong Soo; Lytton-Jean, Abigail; Soule, Christian K; Cheah, Jaime H.; Hayward, Alison; Langer, Robert; Traverso, Giovanni (Nature Publishing Group, Springer, 2021-03-25)
      Nanoformulations of therapeutic drugs are transforming our ability to effectively deliver and treat a myriad of conditions. Often, however, they are complex to produce and exhibit low drug loading, except for nanoparticles ...
    • Computed modeling of alternating electric fields therapy for recurrent glioblastoma 

      Lok, Edwin; Hua, Van; Wong, Eric T (John Wiley & Sons, Ltd, 2015)
      Tumor treating fields (TTFields) are alternating electric fields frequency tuned to 200 kHz for the treatment of recurrent glioblastoma. We report a patient treated with TTFields and determined the distribution of TTFields ...
    • Computed Tomography-Based Muscle Attenuation and Electrical Impedance Myography as Indicators of Trunk Muscle Strength Independent of Muscle Size in Older Adults 

      Anderson, Dennis Earl; Bean, Jonathan F; Holt, Nicole E.; Keel, John C.; Bouxsein, Mary Larsen (Ovid Technologies (Wolters Kluwer Health), 2014)
      Objective—To examine the associations of computed tomography (CT) -based x-ray attenuation and paraspinal electrical impedance myography (EIM) measures of trunk muscles with absolute and relative (normalized by body weight) ...
    • Computer Aided Diagnosis for Confocal Laser Endomicroscopy in Advanced Colorectal Adenocarcinoma 

      Ştefănescu, Daniela; Streba, Costin; Cârţână, Elena Tatiana; Săftoiu, Adrian; Gruionu, Gabriel; Gruionu, Lucian Gheorghe (Public Library of Science, 2016)
      Introduction: Confocal laser endomicroscopy (CLE) is becoming a popular method for optical biopsy of digestive mucosa for both diagnostic and therapeutic procedures. Computer aided diagnosis of CLE images, using image ...
    • A computer program for the estimation of protein and nucleic acid sequence diversity in random point mutagenesis libraries 

      Volles, Michael James; Lansbury, Peter Thomas (Oxford University Press, 2005)
      A computer program for the generation and analysis of in silico random point mutagenesis libraries is described. The program operates by mutagenizing an input nucleic acid sequence according to mutation parameters specified ...
    • Computer vision and augmented reality in gastrointestinal endoscopy 

      Mahmud, Nadim; Cohen, Jonah; Tsourides, Kleovoulos; Berzin, Tyler M. (Oxford University Press, 2015)
      Augmented reality (AR) is an environment-enhancing technology, widely applied in the computer sciences, which has only recently begun to permeate the medical field. Gastrointestinal endoscopy—which relies on the integration ...
    • Computer-Based Drug-Utilization Review — Risk, Benefit, or Boondoggle? 

      Soumerai, Stephen Bertram; Lipton, Helene L. (New England Journal of Medicine (NEJM/MMS), 1995)
      On October 28, 1990, with little debate, Congress passed the Omnibus Budget Reconciliation Act, requiring the states to provide claims-based drug-utilization review to approximately 34 million Medicaid enrollees. The ...
    • Computerized Cognitive Training with Older Adults: A Systematic Review 

      Kueider, Alexandra M.; Parisi, Jeanine M.; Gross, Alden L; Rebok, George W. (Public Library of Science, 2012)
      A systematic review to examine the efficacy of computer-based cognitive interventions for cognitively healthy older adults was conducted. Studies were included if they met the following criteria: average sample age of at ...
    • Computing DNA Duplex Instability Profiles Efficiently with a Two-State Model: Trends of Promoters and Binding Sites 

      Kantorovitz, Miriam R; Rapti, Zoi; Gelev, Vladimir; Usheva, Anny (BioMed Central, 2010)
      Background: DNA instability profiles have been used recently for predicting the transcriptional start site and the location of core promoters, and to gain insight into promoter action. It was also shown that the use of ...
    • Computing Health Quality Measures Using Informatics for Integrating Biology and the Bedside 

      Klann, Jeffrey Gordon; Murphy, Shawn Norman (JMIR Publications Inc., 2013)
      Background: The Health Quality Measures Format (HQMF) is a Health Level 7 (HL7) standard for expressing computable Clinical Quality Measures (CQMs). Creating tools to process HQMF queries in clinical databases will become ...
    • COMT Genetic Variation Confers Risk for Psychotic and Affective Disorders: A Case Control Study 

      Funke, Birgit; Malhotra, Anil K; Finn, Christine T.; Plocik, Alex M; Lake, Stephen L; Lencz, Todd; DeRosse, Pamela; Kane, John M.; Kucherlapati, Raju (BioMed Central, 2005)
      Background: Variation in the COMT gene has been implicated in a number of psychiatric disorders, including psychotic, affective and anxiety disorders. The majority of these studies have focused on the functional Val108/158Met ...
    • COMT Val158Met, but not BDNF Val66Met, is associated with white matter abnormalities of the temporal lobe in patients with first-episode, treatment-naïve major depressive disorder: a diffusion tensor imaging study 

      Hayashi, Kenji; Yoshimura, Reiji; Kakeda, Shingo; Kishi, Taro; Abe, Osamu; Umene-Nakano, Wakako; Katsuki, Asuka; Hori, Hikaru; Ikenouchi-Sugita, Atsuko; Watanabe, Keita; Ide, Satoru; Ueda, Issei; Moriya, Junji; Iwata, Nakao; Korogi, Yukunori; Kubicki, Marek; Nakamura, Jun (Dove Medical Press, 2014)
      We investigated the association between the Val158Met polymorphism of the catechol-O-methyltransferase (COMT) gene, the Val66Met polymorphism of the brain-derived neurotrophic factor (BDNF) gene, and white matter changes ...
    • Concentrated Ambient Particles Alter Myocardial Blood Flow During Acute Ischemia in Conscious Canines 

      Bartoli, Carlo R.; Wellenius, Gregory A.; Coull, Brent Andrew; Akiyama, Ichiro; Diaz, Edgar; Lawrence, Joy E.; Okabe, Kazunori; Verrier, Richard Leonard; Godleski, John Joseph (National Institute of Environmental Health Sciences, 2008)
      Background: Experimental and observational studies have demonstrated that short-term exposure to ambient particulate matter (PM) exacerbates myocardial ischemia. Objectives: We conducted this study to investigate the effects ...
    • The Concentration-Response Relation Between PM\(_{2.5}\) and Daily Deaths. 

      Schwartz, Joel David; Laden, Francine; Zanobetti, Antonella (National Institute of Environmental Health Sciences, 2002)
      Particulate air pollution at commonly occurring concentrations is associated with daily deaths. Recent attention has focused on the shape of the concentration-response curve, particularly at low doses. Several recent ...
    • Concentric Tube Robot Design and Optimization Based on Task and Anatomical Constraints 

      Bergeles, Christos; Gosline, Andrew H.; Vasilyev, Nikolay; Codd, Patrick J.; Del Nido, Pedro J.; Dupont, Pierre E (Institute of Electrical and Electronics Engineers (IEEE), 2015)
      Concentric tube robots are catheter-sized continuum robots that are well suited for minimally invasive surgery inside confined body cavities. These robots are constructed from sets of pre-curved superelastic tubes and are ...
    • Concept and design of a genome-wide association genotyping array tailored for transplantation-specific studies 

      Li, Yun R.; van Setten, Jessica; Verma, Shefali S.; Lu, Yontao; Holmes, Michael V.; Gao, Hui; Lek, Monkol; Nair, Nikhil; Chandrupatla, Hareesh; Chang, Baoli; Karczewski, Konrad J.; Wong, Chanel; Mohebnasab, Maede; Mukhtar, Eyas; Phillips, Randy; Tragante, Vinicius; Hou, Cuiping; Steel, Laura; Lee, Takesha; Garifallou, James; Guettouche, Toumy; Cao, Hongzhi; Guan, Weihua; Himes, Aubree; van Houten, Jacob; Pasquier, Andrew; Yu, Reina; Carrigan, Elena; Miller, Michael B.; Schladt, David; Akdere, Abdullah; Gonzalez, Ana; Llyod, Kelsey M.; McGinn, Daniel; Gangasani, Abhinav; Michaud, Zach; Colasacco, Abigail; Snyder, James; Thomas, Kelly; Wang, Tiancheng; Wu, Baolin; Alzahrani, Alhusain J.; Al-Ali, Amein K.; Al-Muhanna, Fahad A.; Al-Rubaish, Abdullah M.; Al-Mueilo, Samir; Monos, Dimitri S.; Murphy, Barbara; Olthoff, Kim M.; Wijmenga, Cisca; Webster, Teresa; Kamoun, Malek; Balasubramanian, Suganthi; Lanktree, Matthew B.; Oetting, William S.; Garcia-Pavia, Pablo; MacArthur, Daniel G.; de Bakker, Paul I W; Hakonarson, Hakon; Birdwell, Kelly A.; Jacobson, Pamala A.; Ritchie, Marylyn D.; Asselbergs, Folkert W.; Israni, Ajay K.; Shaked, Abraham; Keating, Brendan J. (BioMed Central, 2015)
      Background: In addition to HLA genetic incompatibility, non-HLA difference between donor and recipients of transplantation leading to allograft rejection are now becoming evident. We aimed to create a unique genome-wide ...