HSDM Scholarly Articles

Permanent URI for this collectionhttps://dash.harvard.edu/handle/1/42718991

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  • Publication

    In vivo commensal control of Clostridioides difficile virulence.

    (Cell Journals, 2021-11-10) Girinathan, Brintha P.; DiBenedetto, Nicholas; Worley, Jay N.; Peltier, Johann; Arrieta-Ortiz, Mario L.; Immanuel, Selva Rupa Christinal; Lavin, Richard; Cummins, Christopher K.; Hoffman, Maria; Luo, Yan; Gonzalez-Escalona, Narjol; Allard, Marc; Gerber, Georg K.; Sonenshein, Abraham L.; Onderdonk, Andrew; Baliga, Nitin S.; Dupuy, Bruno; Delaney, Mary; Bry, Lynn

    Leveraging systems biology approaches, we illustrate how metabolically distinct species of Clostridia protect against or worsen Clostridioides difficile infection in mice by modulating the pathogen's colonization, growth, and virulence to impact host survival. Gnotobiotic mice colonized with the amino acid fermenter Paraclostridium bifermentans survive infection with reduced disease severity, while mice colonized with the butyrate-producer, Clostridium sardiniense, succumb more rapidly. Systematic in vivo analyses revealed how each commensal alters the gut-nutrient environment to modulate the pathogen's metabolism, gene regulatory networks, and toxin production. Oral administration of P. bifermentans rescues conventional, clindamycin-treated mice from lethal C. difficile infection in a manner similar to that of monocolonized animals, thereby supporting the therapeutic potential of this commensal species. Our findings lay the foundation for mechanistically informed therapies to counter C. difficile disease using systems biology approaches to define host-commensal-pathogen interactions in vivo.

  • Publication

    Genomic Drivers of Multidrug-Resistant Affecting Vulnerable Patient Populations in the United States and Abroad.

    (ASM Journals, 2021-01-26) Worley, Jay Noboru; Javkar, Kiran; Hoffmann, Maria; Hysell, Kristen; Garcia-Williams, Amanda; Tagg, Kaitlin; Kanjilal, Sanjat; Strain, Errol; Pop, Mihai; Allard, Marc; Francois Watkins, Louise; Bry, Lynn; Bry, Lynn

    Multidrug-resistant (MDR) infections have been identified globally among men who have sex with men (MSM). The highly drug-resistant phenotype often confounds initial antimicrobial therapy, placing patients at risk for adverse outcomes, the development of more drug-resistant strains, and additional treatment failures. New macrolide-resistant strains complicate treatment further as azithromycin is a next-in-line antibiotic for MDR strains, and an antibiotic-strain combination confounded by gaps in validated clinical breakpoints for clinical laboratories to interpret macrolide resistance in We present the first high-resolution genomic analyses of 2,097 U.S. isolates, including those from MDR outbreaks. A sentinel shigellosis case in an MSM patient revealed a strain carrying 12 plasmids, of which two carried known resistance genes, the pKSR100-related plasmid pMHMC-004 and spA-related plasmid pMHMC-012. Genomic-epidemiologic analyses of isolates revealed high carriage rates of pMHMC-004 predominantly in U.S. isolates from men and not in other demographic groups. Isolates genetically related to the sentinel case further harbored elevated numbers of unique replicons, showing the receptivity of this lineage to plasmid acquisition. Findings from integrated genomic-epidemiologic analyses were leveraged to direct targeted clinical actions to improve rapid diagnosis and patient care and for public health efforts to further reduce spread. Multidrug-resistant isolates with resistance to macrolides are an emerging public health threat. We define a plasmid/pathogen complex behind infections seen in the United States and globally in vulnerable patient populations and identify multiple outbreaks in the United States and evidence of intercontinental transmission. Using new tools and sequence information, we experimentally identify the drivers of antibiotic resistance that complicate patient treatment to facilitate improvements to clinical microbiologic testing for their detection. We illustrate the use of these methods to support multiagency efforts to combat multidrug-resistant using publicly available tools, existing genomic data, and resources in clinical microbiology and public health laboratories to inform credible actions to reduce spread.

  • Publication

    Veteran Status and Oral Health Indicators in Older Men: An Analysis Using the 2016 and 2018 Behavioral Risk Factor Surveillance System

    (Wiley, 2025-05-24) Tian, Victoria; Chamut, Steffany; Klevens, R. Monina

    Objectives: US veterans exhibit higher rates of oral disease than nonveterans, affecting their quality of life and systemic disease risk. Regular dental care is essential for preventing tooth loss, especially among older adults. The aim of this study was to assess the association between veteran status, dental visits, and tooth loss among older male Americans.

    Methods: We analyzed data from the 2016 and 2018 Behavioral Risk Factor Surveillance System (BRFSS) surveys in a national cross-sectional study. The study focused on males aged 65 years and older, using descriptive and multivariable logistic regression analyses to measure the association between veteran status and having a dental visit < 1 year ago, and the loss of ≥ 6 teeth due to tooth decay or gum disease. The analyses were adjusted for sociodemographic factors, including age, race/ethnicity, and education level.

    Results: Veterans displayed a higher prevalence and increased odds of tooth loss compared to nonveterans after controlling for race and education. However, there was no difference in recent dental visits based on veteran status. The effect of dental visits on the odds of tooth loss indicated that veterans experienced a stronger protective effect of visits on tooth loss (OR: 0.34, 95% CI: 0.31-0.37) than nonveterans (OR: 0.41, 95% CI: 0.37-0.45).

    Conclusions: Our findings indicate a potential opportunity to reduce disparities in tooth loss among older men. Promoting dental care among veterans could mitigate the risk of tooth loss and its subsequent adverse effects on overall systemic and brain health in this population.

    Keywords: dental care; health inequities; longevity and healthy aging; older adults; oral health; tooth loss; veterans.